Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP705A32 / CYP705A30 (At3g20950 / At3g20940)	save all data as Tab Delimited Table
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Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
Ribosome	KEGG	108	21
transport	FunCat	48	12
transport facilitation	FunCat	44	11
transported compounds (substrates)	FunCat	16	3		To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP705A32 / CYP705A30 (At3g20950 / At3g20940)
max. difference between log2-ratios:				2.5
max. difference between log2-ratios excluding lowest and highest 5%:				1.0
						Link to organ heatmap
there are no co-expressed genes with r>0.5
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP705A32 / CYP705A30 (At3g20950 / At3g20940)
max. difference between log2-ratios:				3.9
max. difference between log2-ratios excluding lowest and highest 5%:				0.6
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
Ribosome	KEGG	12	0.000	2	0.000
Miscellaneous acyl lipid metabolism	AcylLipid	10	0.002	5	0.002
Leaf Glycerolipid Biosynthesis	BioPath	8	0.000	1	0.004
Leaf Glycerolipid Biosynthesis in Plastid	BioPath	8	0.000	1	0.000
fatty acid biosynthesis	TAIR-GO	8	0.000	1	0.000
isoprenoid biosynthesis	FunCat	8	0.000	1	0.005
lipid transport	FunCat	8	0.000	1	0.000
lipid, fatty acid and isoprenoid biosynthesis	FunCat	8	0.000	1	0.004
transport	FunCat	8	0.000	1	0.000
transport facilitation	FunCat	8	0.000	1	0.000
transported compounds (substrates)	FunCat	8	0.000	1	0.000
Synthesis of fatty acids in plastids	AcylLipid	8	0.000	1	0.097
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP705A32 / CYP705A30 (At3g20950 / At3g20940)
max. difference between log2-ratios:				1.5
max. difference between log2-ratios excluding lowest and highest 5%:				0.9
						Link to hormones etc. heatmap
there are no co-expressed genes with r>0.5
Pathways co-expressed in the Mutant data set (with more than 30 annotation points)						CYP705A32 / CYP705A30 (At3g20950 / At3g20940)
max. difference between log2-ratios:				6.1
max. difference between log2-ratios excluding lowest and highest 5%:				1.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Cell Wall Carbohydrate Metabolism	BioPath	169.5	0.000	57	0.000
C-compound and carbohydrate metabolism	FunCat	97	0.023	25	0.109
Ribosome	KEGG	96	0.003	19	0.289
pectin metabolism	BioPath	88.5	0.000	41	0.000
Biosynthesis of Amino Acids and Derivatives	BioPath	86	0.021	16	0.429
Phenylpropanoid Metabolism	BioPath	81	0.033	14	0.699
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria	BioPath	60	0.000	10	0.035
triterpene, sterol, and brassinosteroid metabolism	LitPath	53	0.038	12	0.102
Lipid signaling	AcylLipid	49	0.030	11	0.277
mono-/sesqui-/di-terpene biosynthesis	LitPath	48	0.000	9	0.005
terpenoid metabolism	LitPath	48	0.000	9	0.006
Nucleotide Metabolism	KEGG	45	0.000	8	0.075
Purine metabolism	KEGG	43	0.000	8	0.020
Biosynthesis of prenyl diphosphates	BioPath	40	0.000	7	0.055
transport	FunCat	40	0.000	11	0.000
Starch and sucrose metabolism	KEGG	39	0.000	10	0.013
transport facilitation	FunCat	36	0.000	10	0.000
nucleotide metabolism	FunCat	34	0.000	7	0.000
brassinosteroid biosynthesis	LitPath	33	0.000	4	0.142
Aromatic amino acid (Phe, Tyr, Trp) metabolism	BioPath	32	0.016	4	0.622
biogenesis of cell wall	FunCat	32	0.000	12	0.001
intracellular signalling	FunCat	30.5	0.000	8	0.023
page created by Juergen Ehlting	06/05/06