Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP705A5 (At5g47990) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
















there are no co-expressed pathways common in all data sets



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP705A5 (At5g47990)







max. difference between log2-ratios: 7.5











max. difference between log2-ratios excluding lowest and highest 5%: 5.5











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Stilbene, coumarine and lignin biosynthesis KEGG 42 0.000 15 0.000


Methane metabolism KEGG 36 0.000 15 0.000

Phenylalanine metabolism KEGG 32 0.000 14 0.000

Prostaglandin and leukotriene metabolism KEGG 32 0.000 14 0.000

monoterpenoid biosynthesis TAIR-GO 19 0.000 2 0.000

mono-/sesqui-/di-terpene biosynthesis LitPath 19 0.000 2 0.044

monoterpene biosynthesis LitPath 19 0.000 2 0.000

terpenoid metabolism LitPath 19 0.000 2 0.048

detoxification FunCat 17 0.000 5 0.000

triterpene, sterol, and brassinosteroid metabolism LitPath 17 0.006 4 0.025

Phenylpropanoid Metabolism BioPath 16 0.000 3 0.003

isoprenoid biosynthesis FunCat 14 0.000 3 0.004

lipid, fatty acid and isoprenoid biosynthesis FunCat 14 0.000 3 0.002

Miscellaneous acyl lipid metabolism AcylLipid 14 0.001 7 0.001










Biosynthesis of steroids KEGG 13 0.000 2 0.052










triterpene biosynthesis LitPath 13 0.000 2 0.002










detoxification involving cytochrome P450 FunCat 11 0.000 2 0.000












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP705A5 (At5g47990)







max. difference between log2-ratios: 7.9











max. difference between log2-ratios excluding lowest and highest 5%: 2.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






triterpene, sterol, and brassinosteroid metabolism LitPath 10 0.000 3 0.002
secondary metabolism FunCat 8 0.000 2 0.001
isoprenoid biosynthesis FunCat 7 0.000 2 0.001
lipid, fatty acid and isoprenoid biosynthesis FunCat 7 0.000 2 0.001


































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP705A5 (At5g47990)







max. difference between log2-ratios: 7.4











max. difference between log2-ratios excluding lowest and highest 5%: 2.3











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Stilbene, coumarine and lignin biosynthesis KEGG 32 0.000 4 0.000





Phenylpropanoid Metabolism BioPath 30 0.000 4 0.003




response to UV TAIR-GO 20 0.000 2 0.000




Ascorbate and aldarate metabolism KEGG 20 0.000 2 0.000




Fluorene degradation KEGG 20 0.000 2 0.000




gamma-Hexachlorocyclohexane degradation KEGG 20 0.000 2 0.000




flavonoid, anthocyanin, and proanthocyanidin biosynthesis LitPath 20 0.000 2 0.003




proanthocyanidin biosynthesis LitPath 20 0.000 2 0.003




monoterpenoid biosynthesis TAIR-GO 19 0.000 2 0.000




mono-/sesqui-/di-terpene biosynthesis LitPath 19 0.000 2 0.051










monoterpene biosynthesis LitPath 19 0.000 2 0.000










terpenoid metabolism LitPath 19 0.000 2 0.055










Biosynthesis of Amino Acids and Derivatives BioPath 18 0.000 2 0.074










Glutathione metabolism BioPath 18 0.000 2 0.007










anthocyanin biosynthesis AraCyc 14 0.000 2 0.000










Flavonoid biosynthesis KEGG 14 0.000 2 0.000










core phenylpropanoid metabolism BioPath 12 0.000 2 0.002










colanic acid building blocks biosynthesis AraCyc 12 0.000 3 0.001










detoxification FunCat 11 0.000 2 0.000










detoxification involving cytochrome P450 FunCat 11 0.000 2 0.000





























































Pathways co-expressed in the Mutant data set (with more than 20 annotation points)
CYP705A5 (At5g47990)







max. difference between log2-ratios: 7.9











max. difference between log2-ratios excluding lowest and highest 5%: 4.3











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Photosystems BioPath 64 0.000 9 0.000



glycolysis and gluconeogenesis FunCat 62 0.000 8 0.001


Intermediary Carbon Metabolism BioPath 52 0.000 7 0.010


C-compound and carbohydrate metabolism FunCat 52 0.000 6 0.293


acetate fermentation AraCyc 38 0.000 6 0.000


fructose degradation (anaerobic) AraCyc 38 0.000 6 0.000


glycolysis I AraCyc 38 0.000 6 0.012


glycolysis IV AraCyc 38 0.000 6 0.000


sorbitol fermentation AraCyc 38 0.000 6 0.000


additional photosystem II components BioPath 36 0.000 4 0.001


Carbon fixation KEGG 36 0.000 5 0.000


glycerol degradation II AraCyc 34 0.000 5 0.000


gluconeogenesis AraCyc 28 0.000 4 0.002










glyceraldehyde 3-phosphate degradation AraCyc 28 0.000 4 0.000










protein synthesis FunCat 28 0.002 5 0.041










ATP synthase components BioPath 26 0.000 3 0.000










Gluconeogenesis from lipids in seeds BioPath 26 0.000 4 0.010










ATP synthesis coupled proton transport TAIR-GO 26 0.000 3 0.000










proton transport TAIR-GO 26 0.000 3 0.000










Calvin cycle AraCyc 26 0.000 4 0.001










photosynthesis FunCat 26 0.000 3 0.012










Glycolysis / Gluconeogenesis KEGG 26 0.000 4 0.006










isoprenoid biosynthesis FunCat 25 0.000 5 0.001










lipid, fatty acid and isoprenoid biosynthesis FunCat 25 0.000 5 0.001



























page created by Juergen Ehlting 06/06/06