Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP705A5 (At5g47990)	save all data as Tab Delimited Table
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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no co-expressed pathways common in all data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)						CYP705A5 (At5g47990)
max. difference between log2-ratios:				7.5
max. difference between log2-ratios excluding lowest and highest 5%:				5.5
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Stilbene, coumarine and lignin biosynthesis	KEGG	42	0.000	15	0.000
Methane metabolism	KEGG	36	0.000	15	0.000
Phenylalanine metabolism	KEGG	32	0.000	14	0.000
Prostaglandin and leukotriene metabolism	KEGG	32	0.000	14	0.000
monoterpenoid biosynthesis	TAIR-GO	19	0.000	2	0.000
mono-/sesqui-/di-terpene biosynthesis	LitPath	19	0.000	2	0.044
monoterpene biosynthesis	LitPath	19	0.000	2	0.000
terpenoid metabolism	LitPath	19	0.000	2	0.048
detoxification	FunCat	17	0.000	5	0.000
triterpene, sterol, and brassinosteroid metabolism	LitPath	17	0.006	4	0.025
Phenylpropanoid Metabolism	BioPath	16	0.000	3	0.003
isoprenoid biosynthesis	FunCat	14	0.000	3	0.004
lipid, fatty acid and isoprenoid biosynthesis	FunCat	14	0.000	3	0.002
Miscellaneous acyl lipid metabolism	AcylLipid	14	0.001	7	0.001
Biosynthesis of steroids	KEGG	13	0.000	2	0.052
triterpene biosynthesis	LitPath	13	0.000	2	0.002
detoxification involving cytochrome P450	FunCat	11	0.000	2	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP705A5 (At5g47990)
max. difference between log2-ratios:				7.9
max. difference between log2-ratios excluding lowest and highest 5%:				2.4
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
triterpene, sterol, and brassinosteroid metabolism	LitPath	10	0.000	3	0.002
secondary metabolism	FunCat	8	0.000	2	0.001
isoprenoid biosynthesis	FunCat	7	0.000	2	0.001
lipid, fatty acid and isoprenoid biosynthesis	FunCat	7	0.000	2	0.001
Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)						CYP705A5 (At5g47990)
max. difference between log2-ratios:				7.4
max. difference between log2-ratios excluding lowest and highest 5%:				2.3
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Stilbene, coumarine and lignin biosynthesis	KEGG	32	0.000	4	0.000
Phenylpropanoid Metabolism	BioPath	30	0.000	4	0.003
response to UV	TAIR-GO	20	0.000	2	0.000
Ascorbate and aldarate metabolism	KEGG	20	0.000	2	0.000
Fluorene degradation	KEGG	20	0.000	2	0.000
gamma-Hexachlorocyclohexane degradation	KEGG	20	0.000	2	0.000
flavonoid, anthocyanin, and proanthocyanidin biosynthesis	LitPath	20	0.000	2	0.003
proanthocyanidin biosynthesis	LitPath	20	0.000	2	0.003
monoterpenoid biosynthesis	TAIR-GO	19	0.000	2	0.000
mono-/sesqui-/di-terpene biosynthesis	LitPath	19	0.000	2	0.051
monoterpene biosynthesis	LitPath	19	0.000	2	0.000
terpenoid metabolism	LitPath	19	0.000	2	0.055
Biosynthesis of Amino Acids and Derivatives	BioPath	18	0.000	2	0.074
Glutathione metabolism	BioPath	18	0.000	2	0.007
anthocyanin biosynthesis	AraCyc	14	0.000	2	0.000
Flavonoid biosynthesis	KEGG	14	0.000	2	0.000
core phenylpropanoid metabolism	BioPath	12	0.000	2	0.002
colanic acid building blocks biosynthesis	AraCyc	12	0.000	3	0.001
detoxification	FunCat	11	0.000	2	0.000
detoxification involving cytochrome P450	FunCat	11	0.000	2	0.000
Pathways co-expressed in the Mutant data set (with more than 20 annotation points)						CYP705A5 (At5g47990)
max. difference between log2-ratios:				7.9
max. difference between log2-ratios excluding lowest and highest 5%:				4.3
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Photosystems	BioPath	64	0.000	9	0.000
glycolysis and gluconeogenesis	FunCat	62	0.000	8	0.001
Intermediary Carbon Metabolism	BioPath	52	0.000	7	0.010
C-compound and carbohydrate metabolism	FunCat	52	0.000	6	0.293
acetate fermentation	AraCyc	38	0.000	6	0.000
fructose degradation (anaerobic)	AraCyc	38	0.000	6	0.000
glycolysis I	AraCyc	38	0.000	6	0.012
glycolysis IV	AraCyc	38	0.000	6	0.000
sorbitol fermentation	AraCyc	38	0.000	6	0.000
additional photosystem II components	BioPath	36	0.000	4	0.001
Carbon fixation	KEGG	36	0.000	5	0.000
glycerol degradation II	AraCyc	34	0.000	5	0.000
gluconeogenesis	AraCyc	28	0.000	4	0.002
glyceraldehyde 3-phosphate degradation	AraCyc	28	0.000	4	0.000
protein synthesis	FunCat	28	0.002	5	0.041
ATP synthase components	BioPath	26	0.000	3	0.000
Gluconeogenesis from lipids in seeds	BioPath	26	0.000	4	0.010
ATP synthesis coupled proton transport	TAIR-GO	26	0.000	3	0.000
proton transport	TAIR-GO	26	0.000	3	0.000
Calvin cycle	AraCyc	26	0.000	4	0.001
photosynthesis	FunCat	26	0.000	3	0.012
Glycolysis / Gluconeogenesis	KEGG	26	0.000	4	0.006
isoprenoid biosynthesis	FunCat	25	0.000	5	0.001
lipid, fatty acid and isoprenoid biosynthesis	FunCat	25	0.000	5	0.001
page created by Juergen Ehlting	06/06/06