Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP706A1 (At4g22690) save all data as Tab Delimited Table



























Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.







Pathway Source Sum of scores Sum of genes







Glutathione metabolism BioPath 56 8







Glutathione metabolism KEGG 56 8
























To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.







































For more information on how these pathway maps were generated please read the methods page
























































Pathways co-expressed in the Organ and Tissue data set (with more than 9 annotation points)
CYP706A1 (At4g22690)







max. difference between log2-ratios: 7.5











max. difference between log2-ratios excluding lowest and highest 5%: 6.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Biosynthesis of Amino Acids and Derivatives BioPath 46 0.000 6 0.000



Glutathione metabolism BioPath 22 0.000 3 0.001


toxin catabolism TAIR-GO 22 0.000 3 0.001


Glutathione metabolism KEGG 22 0.000 3 0.000


Stilbene, coumarine and lignin biosynthesis KEGG 19 0.000 3 0.006


Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 16 0.000 2 0.001


intracellular signalling FunCat 13 0.000 3 0.000


Benzoate degradation via CoA ligation KEGG 13 0.000 3 0.004










Inositol phosphate metabolism KEGG 13 0.000 3 0.005










Nicotinate and nicotinamide metabolism KEGG 13 0.000 3 0.003










lignin biosynthesis AraCyc 12 0.000 2 0.000










Phenylpropanoid pathway LitPath 12 0.000 2 0.002










core phenylpropanoid metabolism BioPath 10 0.000 1 0.033










aging TAIR-GO 10 0.000 1 0.002










lignin biosynthesis TAIR-GO 10 0.000 1 0.003










response to stress TAIR-GO 10 0.000 1 0.001










response to water deprivation TAIR-GO 10 0.000 1 0.000










triacylglycerol degradation AraCyc 10 0.000 1 0.006










biogenesis of cell wall FunCat 10 0.000 1 0.037










Miscellaneous acyl lipid metabolism AcylLipid 10 0.000 1 0.000












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP706A1 (At4g22690)







max. difference between log2-ratios: 6.4











max. difference between log2-ratios excluding lowest and highest 5%: 2.7











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Biosynthesis of Amino Acids and Derivatives BioPath 12 0.000 2 0.004
Glutathione metabolism BioPath 12 0.000 2 0.000
sulfate assimilation TAIR-GO 10 0.000 1 0.000
dissimilatory sulfate reduction AraCyc 10 0.000 1 0.000
sulfate assimilation III AraCyc 10 0.000 1 0.002
biogenesis of chloroplast FunCat 10 0.000 1 0.007
nitrogen and sulfur utilization FunCat 10 0.000 1 0.000










Purine metabolism KEGG 10 0.000 1 0.022










Selenoamino acid metabolism KEGG 10 0.000 1 0.006










Sulfur metabolism KEGG 10 0.000 1 0.003










nucleotide metabolism TAIR-GO 9 0.000 1 0.000










de novo biosynthesis of purine nucleotides I AraCyc 9 0.000 1 0.015












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP706A1 (At4g22690)







max. difference between log2-ratios: 3.4











max. difference between log2-ratios excluding lowest and highest 5%: 1.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Miscellaneous acyl lipid metabolism AcylLipid 12 0.000 2 0.019






Gluconeogenesis from lipids in seeds BioPath 10 0.000 1 0.006





fatty acid biosynthesis TAIR-GO 10 0.000 1 0.002





fatty acid oxidation pathway AraCyc 10 0.000 1 0.000





octane oxidation AraCyc 10 0.000 1 0.000





degradation FunCat 10 0.000 1 0.002










degradation of lipids, fatty acids and isoprenoids FunCat 10 0.000 1 0.000










Carbon fixation KEGG 10 0.000 2 0.005










Fatty acid metabolism KEGG 10 0.000 1 0.014










auxin mediated signaling pathway TAIR-GO 9 0.000 1 0.000










calcium ion binding TAIR-GO 9 0.000 1 0.000










Mo-molybdopterin cofactor biosynthesis TAIR-GO 9 0.000 1 0.000










molybdenum ion binding TAIR-GO 9 0.000 1 0.000










response to absence of light TAIR-GO 9 0.000 1 0.000










response to mechanical stimulus TAIR-GO 9 0.000 1 0.000










response to temperature TAIR-GO 9 0.000 1 0.000










thigmotropism TAIR-GO 9 0.000 1 0.000










biosynthesis of vitamins, cofactors, and prosthetic groups FunCat 9 0.000 1 0.001










Folate biosynthesis KEGG 9 0.000 1 0.003










Phosphatidylinositol signaling system KEGG 9 0.000 1 0.014










Signal Transduction KEGG 9 0.000 1 0.015





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP706A1 (At4g22690)







max. difference between log2-ratios: 4.8











max. difference between log2-ratios excluding lowest and highest 5%: 2.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Benzoate degradation via CoA ligation KEGG 37 0.000 8 0.000




Inositol phosphate metabolism KEGG 37 0.000 8 0.000



Nicotinate and nicotinamide metabolism KEGG 37 0.000 8 0.000



Phenylpropanoid Metabolism BioPath 32 0.000 5 0.009



Miscellaneous acyl lipid metabolism AcylLipid 24 0.000 5 0.002



Biosynthesis of Amino Acids and Derivatives BioPath 22 0.004 3 0.104



Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 20 0.000 3 0.003



Phenylpropanoid pathway LitPath 20 0.000 4 0.005



N-terminal protein myristoylation TAIR-GO 18 0.000 2 0.000



degradation FunCat 18 0.000 2 0.002



tryptophan biosynthesis AraCyc 16 0.000 3 0.000



Glutamate metabolism KEGG 16 0.000 2 0.014



tryptophan biosynthesis TAIR-GO 14 0.000 2 0.001



Shikimate pathway LitPath 14 0.000 2 0.022










Trp biosyntesis LitPath 14 0.000 2 0.002










Glutathione metabolism BioPath 12 0.002 2 0.038










nucleotide metabolism FunCat 12 0.000 2 0.000










trehalose biosynthesis I AraCyc 11 0.000 2 0.026










trehalose biosynthesis II AraCyc 11 0.000 2 0.010










trehalose biosynthesis III AraCyc 11 0.000 2 0.002










energy FunCat 11 0.000 2 0.000










metabolism of energy reserves (e.g. glycogen, trehalose) FunCat 11 0.000 2 0.000



























page created by Juergen Ehlting 01/02/06