Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP706A4 (At4g12300)	save all data as Tab Delimited Table
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Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no co-expressed pathways common in the 2 data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP706A4 (At4g12300)
max. difference between log2-ratios:				3.9
max. difference between log2-ratios excluding lowest and highest 5%:				2.8
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Biosynthesis of Amino Acids and Derivatives	BioPath	22	0.000	3	0.005
Glutathione metabolism	BioPath	22	0.000	3	0.000
toxin catabolism	TAIR-GO	12	0.000	2	0.002
Glutathione metabolism	KEGG	12	0.000	2	0.000
Chloroplastic protein turnover	BioPath	10	0.000	1	0.001
ERD1 protease (ClpC-like)	BioPath	10	0.000	1	0.000
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)	BioPath	10	0.002	1	0.052
Regulatory enzymes	BioPath	10	0.000	1	0.000
ATP-dependent proteolysis	TAIR-GO	10	0.000	1	0.002
carotenoid biosynthesis	TAIR-GO	10	0.000	1	0.001
cellular response to sulfate starvation	TAIR-GO	10	0.000	1	0.000
plastid organization and biogenesis	TAIR-GO	10	0.000	1	0.000
response to high light intensity	TAIR-GO	10	0.000	1	0.000
response to temperature	TAIR-GO	10	0.000	1	0.000
cysteine biosynthesis I	AraCyc	10	0.000	1	0.002
sulfate assimilation III	AraCyc	10	0.000	1	0.001
biosynthesis of phenylpropanoids	FunCat	10	0.000	1	0.002
biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine	FunCat	10	0.000	1	0.002
nitrogen and sulfur metabolism	FunCat	10	0.000	1	0.001
stress response	FunCat	10	0.000	1	0.000
Cysteine metabolism	KEGG	10	0.000	1	0.001
Sulfur metabolism	KEGG	10	0.000	1	0.000
Accessory protein/regulatory protein	LitPath	10	0.000	1	0.000
response to ethylene stimulus	TAIR-GO	8	0.000	2	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP706A4 (At4g12300)
max. difference between log2-ratios:				3.0
max. difference between log2-ratios excluding lowest and highest 5%:				1.3
						Link to stress heatmap
there are no co-expressed genes with
Pathways co-expressed in the Hormone etc. data set (with more than 8 annotation points)						CYP706A4 (At4g12300)
max. difference between log2-ratios:				2.0
max. difference between log2-ratios excluding lowest and highest 5%:				0.8
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
serine-isocitrate lyase pathway	AraCyc	14	0.000	2	0.002
core phenylpropanoid metabolism	BioPath	10	0.000	1	0.003
Phenylpropanoid Metabolism	BioPath	10	0.000	1	0.037
lignin biosynthesis	TAIR-GO	10	0.000	1	0.001
phenylpropanoid biosynthesis	TAIR-GO	10	0.000	1	0.000
aerobic respiration -- electron donors reaction list	AraCyc	10	0.000	1	0.007
glycerol degradation II	AraCyc	10	0.000	1	0.027
glycerol metabolism	AraCyc	10	0.000	1	0.003
lignin biosynthesis	AraCyc	10	0.000	1	0.026
phenylpropanoid biosynthesis	AraCyc	10	0.000	1	0.000
suberin biosynthesis	AraCyc	10	0.000	1	0.005
glycolysis and gluconeogenesis	FunCat	10	0.000	1	0.062
isoprenoid biosynthesis	FunCat	10	0.000	1	0.019
lipid, fatty acid and isoprenoid biosynthesis	FunCat	10	0.000	1	0.014
phospholipid biosynthesis	FunCat	10	0.000	1	0.000
Ascorbate and aldarate metabolism	KEGG	10	0.000	1	0.003
Fluorene degradation	KEGG	10	0.000	1	0.001
gamma-Hexachlorocyclohexane degradation	KEGG	10	0.000	1	0.001
Glycerophospholipid metabolism	KEGG	10	0.000	1	0.003
Stilbene, coumarine and lignin biosynthesis	KEGG	10	0.000	1	0.042
metabolism of acyl-lipids in mitochondria	AcylLipid	10	0.000	1	0.006
Phenylpropanoid pathway	LitPath	10	0.000	1	0.000
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP706A4 (At4g12300)
max. difference between log2-ratios:				2.3
max. difference between log2-ratios excluding lowest and highest 5%:				1.2
						Link to mutants heatmap
there are no co-expressed genes with
page created by Juergen Ehlting	06/02/06