Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP706A7 (At4g12330)	save all data as Tab Delimited Table
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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
Biosynthesis of steroids	KEGG	28	5
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 9 annotation points)						CYP706A7 (At4g12330)
max. difference between log2-ratios:				3.8
max. difference between log2-ratios excluding lowest and highest 5%:				2.8
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Stilbene, coumarine and lignin biosynthesis	KEGG	32	0.000	10	0.000
Methane metabolism	KEGG	22	0.000	9	0.000
Phenylalanine metabolism	KEGG	22	0.000	9	0.000
Prostaglandin and leukotriene metabolism	KEGG	22	0.000	9	0.000
monoterpenoid biosynthesis	TAIR-GO	19	0.000	2	0.000
mono-/sesqui-/di-terpene biosynthesis	LitPath	19	0.000	2	0.027
monoterpene biosynthesis	LitPath	19	0.000	2	0.000
terpenoid metabolism	LitPath	19	0.000	2	0.029
detoxification	FunCat	16	0.000	5	0.000
triterpene, sterol, and brassinosteroid metabolism	LitPath	15	0.018	3	0.051
Phenylpropanoid Metabolism	BioPath	14	0.000	2	0.005
isoprenoid biosynthesis	FunCat	14	0.000	3	0.002
lipid, fatty acid and isoprenoid biosynthesis	FunCat	14	0.000	3	0.001
Biosynthesis of steroids	KEGG	13	0.000	2	0.013
triterpene biosynthesis	LitPath	13	0.000	2	0.001
detoxification involving cytochrome P450	FunCat	12	0.000	3	0.000
Glucosyltransferases for benzoic acids	BioPath	10	0.000	1	0.000
fatty acid metabolism	TAIR-GO	10	0.000	1	0.010
Ascorbate and aldarate metabolism	KEGG	10	0.000	1	0.029
Fluorene degradation	KEGG	10	0.000	1	0.011
gamma-Hexachlorocyclohexane degradation	KEGG	10	0.000	1	0.014
Fatty acid elongation and wax and cutin metabolism	AcylLipid	10	0.000	1	0.232
Miscellaneous acyl lipid metabolism	AcylLipid	10	0.020	5	0.006
fatty acid modulation	LitPath	10	0.000	1	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP706A7 (At4g12330)
max. difference between log2-ratios:				3.9
max. difference between log2-ratios excluding lowest and highest 5%:				1.9
						Link to stress heatmap
there are no co-expressed genes with r>0.5
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP706A7 (At4g12330)
max. difference between log2-ratios:				3.8
max. difference between log2-ratios excluding lowest and highest 5%:				2.4
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Oxidative phosphorylation	KEGG	16	0.000	3	0.004
Methane metabolism	KEGG	14	0.000	7	0.000
Phenylalanine metabolism	KEGG	14	0.000	7	0.000
Prostaglandin and leukotriene metabolism	KEGG	14	0.000	7	0.000
Stilbene, coumarine and lignin biosynthesis	KEGG	14	0.000	7	0.000
Cell Wall Carbohydrate Metabolism	BioPath	12.5	0.004	4	0.023
pectin metabolism	BioPath	12.5	0.000	4	0.001
Lipid signaling	AcylLipid	12	0.000	3	0.004
Glucosyltransferases for benzoic acids	BioPath	10	0.000	1	0.002
Phenylpropanoid Metabolism	BioPath	10	0.001	1	0.229
flavonol biosynthesis	AraCyc	10	0.000	1	0.002
biogenesis of cell wall	FunCat	8	0.000	2	0.006
C-compound and carbohydrate metabolism	FunCat	8	0.017	2	0.212
storage protein	FunCat	8	0.000	2	0.000
Biosynthesis of steroids	KEGG	8	0.000	2	0.008
Terpenoid biosynthesis	KEGG	8	0.000	2	0.001
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP706A7 (At4g12330)
max. difference between log2-ratios:				4.2
max. difference between log2-ratios excluding lowest and highest 5%:				2.2
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Ribosome	KEGG	30	0.000	5	0.004
Intermediary Carbon Metabolism	BioPath	26	0.000	3	0.032
C-compound and carbohydrate metabolism	FunCat	26	0.011	3	0.225
glycolysis and gluconeogenesis	FunCat	26	0.000	3	0.022
Photosystems	BioPath	22	0.000	3	0.009
additional photosystem II components	BioPath	16	0.000	2	0.003
ATP synthase components	BioPath	16	0.000	2	0.000
Gluconeogenesis from lipids in seeds	BioPath	16	0.000	2	0.015
ATP synthesis coupled proton transport	TAIR-GO	16	0.000	2	0.000
proton transport	TAIR-GO	16	0.000	2	0.000
acetate fermentation	AraCyc	16	0.000	2	0.007
fructose degradation (anaerobic)	AraCyc	16	0.000	2	0.005
gluconeogenesis	AraCyc	16	0.000	2	0.002
glyceraldehyde 3-phosphate degradation	AraCyc	16	0.000	2	0.000
glycerol degradation II	AraCyc	16	0.000	2	0.002
glycolysis I	AraCyc	16	0.000	2	0.036
glycolysis IV	AraCyc	16	0.000	2	0.006
sorbitol fermentation	AraCyc	16	0.000	2	0.006
Glycolysis / Gluconeogenesis	KEGG	16	0.000	2	0.013
isoprenoid biosynthesis	FunCat	11	0.003	2	0.018
lipid, fatty acid and isoprenoid biosynthesis	FunCat	11	0.001	2	0.012
page created by Juergen Ehlting	06/02/06