Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP707A2 (At2g29090)	save all data as Tab Delimited Table
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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no co-expressed pathways common in the 3 data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)						CYP707A2 (At2g29090)
max. difference between log2-ratios:				6.3
max. difference between log2-ratios excluding lowest and highest 5%:				2.6
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Phenylpropanoid Metabolism	BioPath	20	0.000	2	0.030
C-compound and carbohydrate metabolism	FunCat	20	0.000	6	0.000
Synthesis and storage of oil	AcylLipid	20	0.000	6	0.000
glycolysis and gluconeogenesis	FunCat	18	0.000	3	0.004
glyoxylate cycle	AraCyc	16	0.000	2	0.001
TCA cycle variation VII	AraCyc	16	0.000	2	0.018
TCA cycle variation VIII	AraCyc	16	0.000	2	0.007
Glyoxylate and dicarboxylate metabolism	KEGG	16	0.000	2	0.001
Pyruvate metabolism	KEGG	14	0.000	2	0.014
lignin biosynthesis	AraCyc	12	0.000	2	0.005
Fatty acid biosynthesis (path 2)	KEGG	12	0.000	2	0.000
Fatty acid metabolism	KEGG	12	0.000	2	0.002
Valine, leucine and isoleucine degradation	KEGG	12	0.000	2	0.002
Degradation of storage lipids and straight fatty acids	AcylLipid	12	0.000	2	0.044
Phenylpropanoid pathway	LitPath	12	0.000	2	0.013
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP707A2 (At2g29090)
max. difference between log2-ratios:				4.3
max. difference between log2-ratios excluding lowest and highest 5%:				2.4
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
Phenylpropanoid Metabolism	BioPath	11	0.000	2	0.012
Glucosyltransferases for benzoic acids	BioPath	10	0.000	1	0.001
C-compound and carbohydrate utilization	FunCat	10	0.000	1	0.000
Carotenoid biosynthesis	BioPath	8	0.000	1	0.000
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)	BioPath	8	0.000	1	0.024
abscisic acid biosynthesis	TAIR-GO	8	0.000	1	0.000
response to osmotic stress	TAIR-GO	8	0.000	1	0.000
response to water deprivation	TAIR-GO	8	0.000	1	0.000
sugar mediated signaling	TAIR-GO	8	0.000	1	0.000
xanthophyll biosynthesis	TAIR-GO	8	0.000	1	0.000
Carotenoid biosynthesis	AraCyc	8	0.000	1	0.000
xanthophyll cycle	AraCyc	8	0.000	1	0.000
carotenid biosynthesis	LitPath	8	0.000	1	0.001
Carotenoid and abscisic acid metabolism	LitPath	8	0.000	1	0.003
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP707A2 (At2g29090)
max. difference between log2-ratios:				4.5
max. difference between log2-ratios excluding lowest and highest 5%:				1.8
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Gluconeogenesis from lipids in seeds	BioPath	16	0.000	3	0.000
fatty acid oxidation pathway	AraCyc	10	0.000	1	0.007
octane oxidation	AraCyc	10	0.000	1	0.002
Fatty acid metabolism	KEGG	10	0.000	1	0.005
Miscellaneous acyl lipid metabolism	AcylLipid	10	0.000	1	0.000
polyamine biosynthesis	TAIR-GO	9	0.000	1	0.000
polyamine biosynthesis I	AraCyc	9	0.000	1	0.013
polyamine biosynthesis II	AraCyc	9	0.000	1	0.005
polyamine biosynthesis III	AraCyc	9	0.000	1	0.002
spermine biosynthesis I	AraCyc	9	0.000	1	0.002
spermine biosynthesis II	AraCyc	9	0.000	1	0.000
Arginine and proline metabolism	KEGG	9	0.000	1	0.008
beta-Alanine metabolism	KEGG	9	0.000	1	0.002
Urea cycle and metabolism of amino groups	KEGG	9	0.000	1	0.003
C-compound and carbohydrate metabolism	FunCat	8	0.001	2	0.046
Phenylpropanoid pathway	LitPath	8	0.000	3	0.000
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP707A2 (At2g29090)
max. difference between log2-ratios:				5.5
max. difference between log2-ratios excluding lowest and highest 5%:				2.8
						Link to mutants heatmap
there are no co-expressed genes with r>0.5
page created by Juergen Ehlting	05/24/06