Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP707A2 (At2g29090) save all data as Tab Delimited Table










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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
















there are no co-expressed pathways common in the 3 data sets



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP707A2 (At2g29090)







max. difference between log2-ratios: 6.3











max. difference between log2-ratios excluding lowest and highest 5%: 2.6











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Phenylpropanoid Metabolism BioPath 20 0.000 2 0.030


C-compound and carbohydrate metabolism FunCat 20 0.000 6 0.000

Synthesis and storage of oil AcylLipid 20 0.000 6 0.000

glycolysis and gluconeogenesis FunCat 18 0.000 3 0.004

glyoxylate cycle AraCyc 16 0.000 2 0.001

TCA cycle variation VII AraCyc 16 0.000 2 0.018

TCA cycle variation VIII AraCyc 16 0.000 2 0.007

Glyoxylate and dicarboxylate metabolism KEGG 16 0.000 2 0.001

Pyruvate metabolism KEGG 14 0.000 2 0.014

lignin biosynthesis AraCyc 12 0.000 2 0.005

Fatty acid biosynthesis (path 2) KEGG 12 0.000 2 0.000










Fatty acid metabolism KEGG 12 0.000 2 0.002










Valine, leucine and isoleucine degradation KEGG 12 0.000 2 0.002










Degradation of storage lipids and straight fatty acids AcylLipid 12 0.000 2 0.044










Phenylpropanoid pathway LitPath 12 0.000 2 0.013












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP707A2 (At2g29090)







max. difference between log2-ratios: 4.3











max. difference between log2-ratios excluding lowest and highest 5%: 2.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Phenylpropanoid Metabolism BioPath 11 0.000 2 0.012
Glucosyltransferases for benzoic acids BioPath 10 0.000 1 0.001
C-compound and carbohydrate utilization FunCat 10 0.000 1 0.000










Carotenoid biosynthesis BioPath 8 0.000 1 0.000










Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 8 0.000 1 0.024










abscisic acid biosynthesis TAIR-GO 8 0.000 1 0.000










response to osmotic stress TAIR-GO 8 0.000 1 0.000










response to water deprivation TAIR-GO 8 0.000 1 0.000










sugar mediated signaling TAIR-GO 8 0.000 1 0.000










xanthophyll biosynthesis TAIR-GO 8 0.000 1 0.000










Carotenoid biosynthesis AraCyc 8 0.000 1 0.000










xanthophyll cycle AraCyc 8 0.000 1 0.000










carotenid biosynthesis LitPath 8 0.000 1 0.001










Carotenoid and abscisic acid metabolism LitPath 8 0.000 1 0.003












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP707A2 (At2g29090)







max. difference between log2-ratios: 4.5











max. difference between log2-ratios excluding lowest and highest 5%: 1.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Gluconeogenesis from lipids in seeds BioPath 16 0.000 3 0.000





fatty acid oxidation pathway AraCyc 10 0.000 1 0.007




octane oxidation AraCyc 10 0.000 1 0.002




Fatty acid metabolism KEGG 10 0.000 1 0.005




Miscellaneous acyl lipid metabolism AcylLipid 10 0.000 1 0.000




polyamine biosynthesis TAIR-GO 9 0.000 1 0.000










polyamine biosynthesis I AraCyc 9 0.000 1 0.013










polyamine biosynthesis II AraCyc 9 0.000 1 0.005










polyamine biosynthesis III AraCyc 9 0.000 1 0.002










spermine biosynthesis I AraCyc 9 0.000 1 0.002










spermine biosynthesis II AraCyc 9 0.000 1 0.000










Arginine and proline metabolism KEGG 9 0.000 1 0.008










beta-Alanine metabolism KEGG 9 0.000 1 0.002










Urea cycle and metabolism of amino groups KEGG 9 0.000 1 0.003










C-compound and carbohydrate metabolism FunCat 8 0.001 2 0.046










Phenylpropanoid pathway LitPath 8 0.000 3 0.000





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP707A2 (At2g29090)







max. difference between log2-ratios: 5.5











max. difference between log2-ratios excluding lowest and highest 5%: 2.8

















Link to mutants heatmap






there are no co-expressed genes with r>0.5





































page created by Juergen Ehlting 05/24/06