| _________________________________________ |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) |
|
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
|
|
|
|
|
|
| Pathway |
Source |
Sum of scores |
Sum of genes |
|
|
|
|
|
|
|
| sterol biosynthesis |
BioPath |
36 |
4 |
|
|
|
|
|
|
|
| sterol biosynthesis |
AraCyc |
36 |
4 |
|
|
|
|
|
|
|
|
|
| Phenylpropanoid Metabolism |
BioPath |
31 |
5 |
|
|
|
|
|
|
|
|
|
| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
22 |
3 |
|
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
|
|
|
|
|
|
|
|
| lignin biosynthesis |
AraCyc |
22 |
3 |
|
|
|
|
|
|
|
|
|
| lignin biosynthesis |
AraCyc |
22 |
3 |
|
|
|
|
|
|
|
|
|
| biosynthesis of derivatives of homoisopentenyl pyrophosphate |
FunCat |
18 |
2 |
|
For more information on how these pathway maps were generated please read the methods page |
|
|
|
|
|
|
|
|
| Terpenoid biosynthesis |
KEGG |
18 |
2 |
|
|
|
|
|
|
|
|
|
| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
18 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| Flavonoid and anthocyanin metabolism |
BioPath |
17 |
3 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| flavonoid biosynthesis |
TAIR-GO |
16 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| mRNA synthesis |
FunCat |
16 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| RNA synthesis |
FunCat |
16 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| transcription |
FunCat |
16 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
| transcriptional control |
FunCat |
16 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the Hormone etc. data set (with more than 12 annotation points) |
|
CYP707A4 (At3g19270) |
|
|
|
|
|
|
|
|
| max. difference between log2-ratios: |
2.4 |
|
|
|
|
|
|
|
|
|
|
|
|
| max. difference between log2-ratios excluding lowest and highest 5%: |
0.0 |
|
|
|
|
|
|
|
|
|
|
|
|
| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
|
|
|
|
|
|
|
| Cell Wall Carbohydrate Metabolism |
BioPath |
42 |
0.000 |
7 |
0.096 |
|
|
|
|
|
|
| Lipid signaling |
AcylLipid |
34 |
0.000 |
4 |
0.311 |
|
|
|
|
|
| response to abscisic acid stimulus |
TAIR-GO |
33 |
0.000 |
5 |
0.000 |
|
|
|
|
|
| Fatty acid metabolism |
KEGG |
33 |
0.000 |
5 |
0.000 |
|
|
|
|
|
| Urea cycle and metabolism of amino groups |
KEGG |
29 |
0.000 |
3 |
0.001 |
|
|
|
|
|
| Inositol phosphate metabolism |
KEGG |
27 |
0.000 |
4 |
0.048 |
|
|
|
|
|
| Phenylpropanoid Metabolism |
BioPath |
23 |
0.040 |
4 |
0.096 |
|
|
|
|
|
| Glycerolipid metabolism |
KEGG |
23 |
0.000 |
4 |
0.000 |
|
|
|
|
|
| Miscellaneous acyl lipid metabolism |
AcylLipid |
22 |
0.049 |
7 |
0.025 |
|
|
|
|
|
| Gluconeogenesis from lipids in seeds |
BioPath |
20 |
0.000 |
2 |
0.072 |
|
|
|
|
|
| Prolin/Hydroxyproline from glutamate |
BioPath |
20 |
0.000 |
2 |
0.000 |
|
|
|
|
|
| hyperosmotic salinity response |
TAIR-GO |
20 |
0.000 |
2 |
0.000 |
|
|
|
|
|
| proline biosynthesis |
TAIR-GO |
20 |
0.000 |
2 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| sucrose biosynthesis |
AraCyc |
20 |
0.000 |
3 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| glycolysis and gluconeogenesis |
FunCat |
20 |
0.009 |
3 |
0.157 |
|
|
|
|
|
|
|
|
|
|
|
| Phosphatidylinositol signaling system |
KEGG |
20 |
0.000 |
2 |
0.032 |
|
|
|
|
|
|
|
|
|
|
|
| Signal Transduction |
KEGG |
20 |
0.000 |
2 |
0.034 |
|
|
|
|
|
|
|
|
|
|
|
| response to water deprivation |
TAIR-GO |
19 |
0.000 |
2 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| Leaf Glycerolipid Biosynthesis in cytosol / ER |
BioPath |
17 |
0.000 |
2 |
0.008 |
|
|
|
|
|
|
|
|
|
|
|
| Pyruvate metabolism |
KEGG |
17 |
0.004 |
4 |
0.015 |
|
|
|
|
|
|
|
|
|
|
|
| sucrose metabolism |
BioPath |
16 |
0.000 |
2 |
0.002 |
|
|
|
|
|
|
|
|
|
|
|
| sucrose degradation III |
AraCyc |
16 |
0.000 |
2 |
0.004 |
|
|
|
|
|
|
|
|
|
|
|
| Starch and sucrose metabolism |
KEGG |
16 |
0.013 |
2 |
0.199 |
|
|
|
|
|
|
|
|
|
|
|
| Phenylpropanoid pathway |
LitPath |
16 |
0.000 |
3 |
0.005 |
|
|
|
|
|
|
|
|
|
|
|
| Arginine and proline metabolism |
KEGG |
15 |
0.000 |
3 |
0.010 |
|
|
|
|
|
|
|
|
|
|
|
| beta-Alanine metabolism |
KEGG |
15 |
0.000 |
3 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| core phenylpropanoid metabolism |
BioPath |
14 |
0.000 |
2 |
0.025 |
|
|
|
|
|
|
|
|
|
|
|
| C-compound, carbohydrate anabolism |
FunCat |
14 |
0.000 |
2 |
0.004 |
|
|
|
|
|
|
|
|
|
|
|
| Ascorbate and aldarate metabolism |
KEGG |
14 |
0.000 |
3 |
0.002 |
|
|
|
|
|
|
|
|
|
|
|
| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
13 |
0.026 |
2 |
0.060 |
|
|
|
|
|
|
|
|
|
|
|
| Bile acid biosynthesis |
KEGG |
13 |
0.000 |
3 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) |
|
CYP707A4 (At3g19270) |
|
|
|
|
|
|
|
|
| max. difference between log2-ratios: |
6.8 |
|
|
|
|
|
|
|
|
|
|
|
|
| max. difference between log2-ratios excluding lowest and highest 5%: |
1.4 |
|
|
|
|
|
|
|
|
|
|
|
|
| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
|
|
|
|
|
|
|
| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
9 |
0.000 |
1 |
0.042 |
|
|
|
|
| sterol biosynthesis |
BioPath |
9 |
0.000 |
1 |
0.008 |
|
|
|
| sterol biosynthesis |
AraCyc |
9 |
0.000 |
1 |
0.000 |
|
|
|
| biosynthesis of derivatives of homoisopentenyl pyrophosphate |
FunCat |
9 |
0.000 |
1 |
0.006 |
|
|
|
| Biosynthesis of steroids |
KEGG |
9 |
0.000 |
1 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| Terpenoid biosynthesis |
KEGG |
9 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| triterpene, sterol, and brassinosteroid metabolism |
LitPath |
9 |
0.000 |
1 |
0.010 |
|
|
|
|
|
|
|
|
|
|
|
| Flavonoid and anthocyanin metabolism |
BioPath |
8 |
0.000 |
1 |
0.033 |
|
|
|
|
|
|
|
|
|
|
|
| Phenylpropanoid Metabolism |
BioPath |
8 |
0.021 |
1 |
0.229 |
|
|
|
|
|
|
|
|
|
|
|
| flavonoid biosynthesis |
TAIR-GO |
8 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| biogenesis of chloroplast |
FunCat |
8 |
0.001 |
2 |
0.011 |
|
|
|
|
|
|
|
|
|
|
|
| mRNA synthesis |
FunCat |
8 |
0.000 |
1 |
0.018 |
|
|
|
|
|
|
|
|
|
|
|
| RNA synthesis |
FunCat |
8 |
0.000 |
1 |
0.018 |
|
|
|
|
|
|
|
|
|
|
|
| transcription |
FunCat |
8 |
0.000 |
1 |
0.005 |
|
|
|
|
|
|
|
|
|
|
|
| transcriptional control |
FunCat |
8 |
0.000 |
1 |
0.004 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
