Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP708A2 (At5g48000) save all data as Tab Delimited Table










_________________________________________














Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.





Pathway Source Sum of scores Sum of genes






monoterpene biosynthesis LitPath 75 8






monoterpene biosynthesis AraCyc 65 7








secondary metabolism FunCat 48 12













To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP708A2 (At5g48000)







max. difference between log2-ratios: 8.5











max. difference between log2-ratios excluding lowest and highest 5%: 7.1











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Stilbene, coumarine and lignin biosynthesis KEGG 46 0.000 17 0.000


Phenylalanine metabolism KEGG 45 0.000 17 0.000

Methane metabolism KEGG 40 0.000 17 0.000

Prostaglandin and leukotriene metabolism KEGG 36 0.000 16 0.000

Phenylpropanoid Metabolism BioPath 22 0.000 5 0.003

isoprenoid biosynthesis FunCat 22 0.000 5 0.001

lipid, fatty acid and isoprenoid biosynthesis FunCat 22 0.000 5 0.000

Miscellaneous acyl lipid metabolism AcylLipid 20 0.003 10 0.000

monoterpenoid biosynthesis TAIR-GO 19 0.000 2 0.000

detoxification FunCat 19 0.000 6 0.000

mono-/sesqui-/di-terpene biosynthesis LitPath 19 0.000 2 0.066

monoterpene biosynthesis LitPath 19 0.000 2 0.000

terpenoid metabolism LitPath 19 0.000 2 0.071

Fatty acid elongation and wax and cutin metabolism AcylLipid 18 0.000 3 0.100










Lipid signaling AcylLipid 18 0.042 3 0.596










cation transport (Na, K, Ca , NH4, etc.) FunCat 17 0.000 2 0.000










heavy metal ion transport (Cu, Fe, etc.) FunCat 17 0.000 2 0.000










ion transport FunCat 17 0.000 2 0.000










transport FunCat 17 0.000 2 0.000










transport facilitation FunCat 17 0.000 2 0.000










transported compounds (substrates) FunCat 17 0.000 2 0.000










triterpene, sterol, and brassinosteroid metabolism LitPath 17 0.015 4 0.047










Biosynthesis of steroids KEGG 13 0.008 2 0.111










Tryptophan metabolism KEGG 13 0.000 2 0.054










Tyrosine metabolism KEGG 13 0.000 2 0.080










triterpene biosynthesis LitPath 13 0.000 2 0.003










biosynthesis of secondary products derived from primary amino acids FunCat 11 0.000 3 0.000










detoxification involving cytochrome P450 FunCat 11 0.000 2 0.001










Arginine and proline metabolism KEGG 11 0.001 2 0.090












































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP708A2 (At5g48000)







max. difference between log2-ratios: 8.5











max. difference between log2-ratios excluding lowest and highest 5%: 2.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






mono-/sesqui-/di-terpene biosynthesis LitPath 27 0.000 4 0.001
terpenoid metabolism LitPath 27 0.000 4 0.001
monoterpenoid biosynthesis TAIR-GO 19 0.000 2 0.000
monoterpene biosynthesis LitPath 19 0.000 2 0.000
secondary metabolism FunCat 10 0.000 3 0.000
monoterpene biosynthesis AraCyc 9 0.000 1 0.000










plant monoterpene biosynthesis AraCyc 9 0.000 1 0.000












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP708A2 (At5g48000)







max. difference between log2-ratios: 7.6











max. difference between log2-ratios excluding lowest and highest 5%: 2.3











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Stilbene, coumarine and lignin biosynthesis KEGG 34 0.000 5 0.000





Phenylpropanoid Metabolism BioPath 33 0.000 6 0.002




glucosinolate biosynthesis TAIR-GO 20 0.000 2 0.000




response to UV TAIR-GO 20 0.000 2 0.000




glucosinolate biosynthesis from homomethionine AraCyc 20 0.000 2 0.000




secondary metabolism FunCat 20 0.000 4 0.000




Ascorbate and aldarate metabolism KEGG 20 0.000 2 0.001




Fluorene degradation KEGG 20 0.000 2 0.000




gamma-Hexachlorocyclohexane degradation KEGG 20 0.000 2 0.000




flavonoid, anthocyanin, and proanthocyanidin biosynthesis LitPath 20 0.000 2 0.004




Glucosinolate Metabolism LitPath 20 0.000 2 0.020




proanthocyanidin biosynthesis LitPath 20 0.000 2 0.004










monoterpenoid biosynthesis TAIR-GO 19 0.000 2 0.000










mono-/sesqui-/di-terpene biosynthesis LitPath 19 0.000 2 0.074










monoterpene biosynthesis LitPath 19 0.000 2 0.000










terpenoid metabolism LitPath 19 0.000 2 0.080










dTDP-rhamnose biosynthesis AraCyc 15 0.000 3 0.001










anthocyanin biosynthesis AraCyc 14 0.000 2 0.000










Flavonoid biosynthesis KEGG 14 0.000 2 0.000










Flavonoid and anthocyanin metabolism BioPath 13 0.000 3 0.002










detoxification FunCat 13 0.000 3 0.000










core phenylpropanoid metabolism BioPath 12 0.000 2 0.011










colanic acid building blocks biosynthesis AraCyc 12 0.000 3 0.002










detoxification involving cytochrome P450 FunCat 11 0.000 2 0.000





























































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP708A2 (At5g48000)







max. difference between log2-ratios: 8.3











max. difference between log2-ratios excluding lowest and highest 5%: 4.5











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






isoprenoid biosynthesis FunCat 17 0.000 3 0.000



lipid, fatty acid and isoprenoid biosynthesis FunCat 17 0.000 3 0.000


triterpene, sterol, and brassinosteroid metabolism LitPath 15 0.000 3 0.004


Fatty acid elongation and wax and cutin metabolism AcylLipid 14 0.000 2 0.000


Biosynthesis of steroids KEGG 13 0.000 2 0.000


triterpene biosynthesis LitPath 13 0.000 2 0.000










detoxification FunCat 11 0.000 2 0.000










detoxification involving cytochrome P450 FunCat 11 0.000 2 0.000










additional photosystem II components BioPath 10 0.000 1 0.001










ATP synthase components BioPath 10 0.000 1 0.000










Intermediary Carbon Metabolism BioPath 10 0.000 1 0.019










Photosystems BioPath 10 0.000 1 0.009










ATP synthesis coupled proton transport TAIR-GO 10 0.000 1 0.000










fatty acid metabolism TAIR-GO 10 0.000 1 0.002










proton transport TAIR-GO 10 0.000 1 0.000










proton-transporting ATP synthase, catalytic core (sensu Eukaryota) TAIR-GO 10 0.000 1 0.000










Calvin cycle AraCyc 10 0.000 1 0.002










glycolysis and gluconeogenesis FunCat 10 0.001 1 0.132










photosynthesis FunCat 10 0.000 1 0.023










Ascorbate and aldarate metabolism KEGG 10 0.000 1 0.002










Carbon fixation KEGG 10 0.000 1 0.011










Fluorene degradation KEGG 10 0.000 1 0.001










gamma-Hexachlorocyclohexane degradation KEGG 10 0.000 1 0.001










Glyoxylate and dicarboxylate metabolism KEGG 10 0.000 1 0.002










Stilbene, coumarine and lignin biosynthesis KEGG 10 0.000 1 0.025










fatty acid modulation LitPath 10 0.000 1 0.000










secondary metabolism FunCat 8 0.000 2 0.004










pentacyclic triterpenoid biosynthesis TAIR-GO 7 0.000 1 0.000



























page created by Juergen Ehlting 05/29/06