Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP712A1 (At2g42250)	save all data as Tab Delimited Table
_________________________________________
Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no co-expressed pathways common in the 2 data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP712A1 (At2g42250)
max. difference between log2-ratios:				4.5
max. difference between log2-ratios excluding lowest and highest 5%:				1.1
						Link to organ heatmap
there are no co-expressed genes with more than 6 annotation points
Pathways co-expressed in the Stress data set ( with more than 10 annotation points)						CYP712A1 (At2g42250)
max. difference between log2-ratios:				9.4
max. difference between log2-ratios excluding lowest and highest 5%:				1.7
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
Stilbene, coumarine and lignin biosynthesis	KEGG	36	0.000	12	0.000
Cell Wall Carbohydrate Metabolism	BioPath	28	0.000	6	0.011
Methane metabolism	KEGG	26	0.000	11	0.000
Phenylalanine metabolism	KEGG	26	0.000	11	0.000
Prostaglandin and leukotriene metabolism	KEGG	26	0.000	11	0.000
Intermediary Carbon Metabolism	BioPath	20	0.000	3	0.032
glycolysis and gluconeogenesis	FunCat	18	0.000	4	0.006
acetyl-CoA assimilation	AraCyc	16	0.000	2	0.008
serine-isocitrate lyase pathway	AraCyc	16	0.000	2	0.019
TCA cycle variation VII	AraCyc	16	0.000	2	0.059
TCA cycle variation VIII	AraCyc	16	0.000	2	0.024
Fructose and mannose metabolism	KEGG	16	0.000	3	0.009
Reductive carboxylate cycle (CO2 fixation)	KEGG	16	0.000	2	0.005
detoxification	FunCat	14	0.000	3	0.000
Phenylpropanoid Metabolism	BioPath	12	0.030	2	0.151
Fatty acid elongation and wax and cutin metabolism	AcylLipid	12	0.000	2	0.074
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP712A1 (At2g42250)
max. difference between log2-ratios:				2.2
max. difference between log2-ratios excluding lowest and highest 5%:				0.4
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
lipases pathway	AraCyc	9	0.000	1	0.000
degradation	FunCat	9	0.000	1	0.000
intracellular signalling	FunCat	9	0.000	1	0.002
lipid, fatty acid and isoprenoid degradation	FunCat	9	0.000	1	0.000
second messenger mediated signal transduction	FunCat	9	0.000	1	0.000
Lipid signaling	AcylLipid	9	0.000	1	0.000
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP712A1 (At2g42250)
max. difference between log2-ratios:				3.7
max. difference between log2-ratios excluding lowest and highest 5%:				0.9
						Link to mutants heatmap
there are no co-expressed genes with more than 6 annotation points
page created by Juergen Ehlting	05/24/06