Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP714A1(At5g24910) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.





Pathway Source Sum of scores Sum of genes






abscisic acid biosynthesis TAIR-GO 45 7






secondary metabolism FunCat 37 4
























To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP714A1(At5g24910)







max. difference between log2-ratios: 6.2











max. difference between log2-ratios excluding lowest and highest 5%: 4.1











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Synthesis and storage of oil AcylLipid 34 0.000 9 0.000


Miscellaneous acyl lipid metabolism AcylLipid 27 0.000 6 0.275

glycolysis and gluconeogenesis FunCat 22 0.000 4 0.023

gibberellic acid biosynthesis TAIR-GO 20 0.000 2 0.000

plant / fungal specific systemic sensing and response FunCat 20 0.000 2 0.002

plant hormonal regulation FunCat 20 0.000 2 0.002

Diterpenoid biosynthesis KEGG 20 0.000 2 0.000

Pyruvate metabolism KEGG 20 0.000 3 0.002

Gibberellin metabolism LitPath 20 0.000 2 0.007

giberelin biosynthesis LitPath 20 0.000 2 0.003

acyl-CoA binding TAIR-GO 19 0.000 2 0.000

lipid transport TAIR-GO 19 0.000 2 0.000

abscisic acid biosynthesis TAIR-GO 12 0.000 2 0.000










abscisic acid biosynthesis AraCyc 12 0.000 2 0.000










abscisic acid biosynthesis LitPath 12 0.000 2 0.001










Carotenoid and abscisic acid metabolism LitPath 12 0.000 2 0.013












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP714A1(At5g24910)







max. difference between log2-ratios: 3.0











max. difference between log2-ratios excluding lowest and highest 5%: 1.3

















Link to stress heatmap






there are no co-expressed genes with r>0.5



















































Pathways co-expressed in the Hormone etc. data set (with more than 9 annotation points)
CYP714A1(At5g24910)







max. difference between log2-ratios: 3.6











max. difference between log2-ratios excluding lowest and highest 5%: 1.6











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






secondary metabolism FunCat 20 0.000 2 0.031





intracellular signalling FunCat 17.5 0.000 4 0.000




Biosynthesis of Amino Acids and Derivatives BioPath 14 0.000 3 0.012




Glutathione metabolism BioPath 14 0.000 3 0.000




toxin catabolism TAIR-GO 14 0.000 3 0.002




isoprenoid biosynthesis FunCat 14 0.000 3 0.005




lipid, fatty acid and isoprenoid biosynthesis FunCat 14 0.000 3 0.003




Cell Wall Carbohydrate Metabolism BioPath 12 0.039 2 0.291




Glutathione metabolism KEGG 12 0.000 2 0.006




Benzoate degradation via CoA ligation KEGG 11.5 0.000 3 0.007




gibberellic acid biosynthesis TAIR-GO 10 0.000 1 0.009










glucosinolate biosynthesis TAIR-GO 10 0.000 1 0.004










gibberellin biosynthesis AraCyc 10 0.000 1 0.003










glucosinolate biosynthesis from homomethionine AraCyc 10 0.000 1 0.000










biosynthesis of phenylpropanoids FunCat 10 0.000 1 0.058










biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine FunCat 10 0.000 1 0.058










plant / fungal specific systemic sensing and response FunCat 10 0.000 1 0.020










plant hormonal regulation FunCat 10 0.000 1 0.020










transport FunCat 10 0.000 2 0.000










transport facilitation FunCat 10 0.000 2 0.000










Diterpenoid biosynthesis KEGG 10 0.000 1 0.005










Phosphatidylinositol signaling system KEGG 10 0.000 2 0.003










Signal Transduction KEGG 10 0.000 2 0.003










Gibberellin metabolism LitPath 10 0.000 1 0.003










giberelin biosynthesis LitPath 10 0.000 1 0.002










Glucosinolate Metabolism LitPath 10 0.000 1 0.004





























































Pathways co-expressed in the Mutant data set (with more than 8 annotation points)
CYP714A1(At5g24910)







max. difference between log2-ratios: 5.8











max. difference between log2-ratios excluding lowest and highest 5%: 1.7











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






abscisic acid biosynthesis TAIR-GO 9 0.000 1 0.000



auxin mediated signaling pathway TAIR-GO 9 0.000 1 0.000


molybdenum incorporation into molybdenum-molybdopterin complex TAIR-GO 9 0.000 1 0.000










response to stress TAIR-GO 9 0.000 1 0.000










sugar mediated signaling TAIR-GO 9 0.000 1 0.000










secondary metabolism FunCat 8 0.000 1 0.000



























page created by Juergen Ehlting 05/24/06