| _________________________________________ |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the 2 data sets (with more than 6 annotation points each) |
|
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
|
|
|
|
|
|
|
|
| Pathway |
Source |
Sum of scores |
Sum of genes |
|
|
|
|
|
|
|
|
| Biosynthesis of prenyl diphosphates |
BioPath |
20 |
2 |
|
|
|
|
|
|
|
|
| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) |
BioPath |
20 |
2 |
|
|
|
|
|
|
|
|
| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis |
LitPath |
20 |
2 |
|
|
|
|
|
|
|
|
|
|
|
|
|
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
For more information on how these pathway maps were generated please read the methods page |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) |
|
CYP718 (At2g42850) |
|
|
|
|
|
|
|
|
| max. difference between log2-ratios: |
6.4 |
|
|
|
|
|
|
|
|
|
|
|
|
| max. difference between log2-ratios excluding lowest and highest 5%: |
0.0 |
|
|
|
|
|
|
|
|
|
|
|
|
| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
|
|
|
|
|
|
|
| Cell Wall Carbohydrate Metabolism |
BioPath |
22.5 |
0.000 |
5 |
0.025 |
|
|
|
| gibberellin biosynthesis |
AraCyc |
13 |
0.000 |
2 |
0.000 |
|
|
| cellulose biosynthesis |
BioPath |
12 |
0.000 |
2 |
0.004 |
|
|
| nucleotide metabolism |
FunCat |
12 |
0.000 |
2 |
0.000 |
|
|
| purine nucleotide metabolism |
FunCat |
12 |
0.000 |
2 |
0.001 |
|
|
| Phosphatidylinositol signaling system |
KEGG |
11 |
0.000 |
2 |
0.003 |
|
|
| Signal Transduction |
KEGG |
11 |
0.000 |
2 |
0.003 |
|
|
| pectin metabolism |
BioPath |
10.5 |
0.000 |
3 |
0.019 |
|
|
| Biosynthesis of prenyl diphosphates |
BioPath |
10 |
0.000 |
1 |
0.038 |
|
|
| Methionin/SAM/ethylene metabolism from cysteine and aspartate |
BioPath |
10 |
0.000 |
2 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) |
BioPath |
10 |
0.003 |
1 |
0.117 |
|
|
|
|
|
|
|
|
|
|
|
| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.022 |
|
|
|
|
|
|
|
|
|
|
|
| gibberellic acid biosynthesis |
TAIR-GO |
9 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| hemicellulose biosynthesis |
BioPath |
8 |
0.000 |
1 |
0.005 |
|
|
|
|
|
|
|
|
|
|
|
| secondary metabolism |
FunCat |
8 |
0.000 |
2 |
0.013 |
|
|
|
|
|
|
|
|
|
|
|
| Fructose and mannose metabolism |
KEGG |
8 |
0.000 |
1 |
0.054 |
|
|
|
|
|
|
|
|
|
|
|
| Glycan Biosynthesis and Metabolism |
KEGG |
8 |
0.000 |
1 |
0.094 |
|
|
|
|
|
|
|
|
|
|
|
| Glycerolipid metabolism |
KEGG |
8 |
0.000 |
1 |
0.029 |
|
|
|
|
|
|
|
|
|
|
|
| Methane metabolism |
KEGG |
8 |
0.000 |
4 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| Phenylalanine metabolism |
KEGG |
8 |
0.000 |
4 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| Prostaglandin and leukotriene metabolism |
KEGG |
8 |
0.000 |
4 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| Stilbene, coumarine and lignin biosynthesis |
KEGG |
8 |
0.000 |
4 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| Lipid signaling |
AcylLipid |
8 |
0.000 |
2 |
0.015 |
|
|
|
|
|
|
|
|
|
|
|
| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
8 |
0.000 |
2 |
0.011 |
|
|
|
|
|
|
|
|
|
|
|
| terpenoid metabolism |
LitPath |
8 |
0.000 |
2 |
0.012 |
|
|
|
|
|
|
|
|
|
|
|
| calcium-mediated signaling |
TAIR-GO |
7 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| cell growth / morphogenesis |
FunCat |
7 |
0.000 |
1 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| cytoskeleton |
FunCat |
7 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| directional cell growth (morphogenesis) |
FunCat |
7 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| intracellular signalling |
FunCat |
7 |
0.000 |
1 |
0.076 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) |
|
CYP718 (At2g42850) |
|
|
|
|
|
|
|
|
| max. difference between log2-ratios: |
0.4 |
|
|
|
|
|
|
|
|
|
|
|
|
| max. difference between log2-ratios excluding lowest and highest 5%: |
0.0 |
|
|
|
|
|
|
|
|
|
|
|
|
| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
|
|
|
|
|
|
|
| Biosynthesis of prenyl diphosphates |
BioPath |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) |
BioPath |
10 |
0.000 |
1 |
0.001 |
|
|
|
| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
