Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71A19 (At4g13290) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.































there are no pathways co-expressed in all four data sets



























To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.









































For more information on how these pathway maps were generated please read the methods page


























































































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP71A19 (At4g13290)







max. difference between log2-ratios: 6.4











max. difference between log2-ratios excluding lowest and highest 5%: 4.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






mono-/sesqui-/di-terpene biosynthesis LitPath 29 0.000 3 0.015


terpenoid metabolism LitPath 29 0.000 3 0.016

Stilbene, coumarine and lignin biosynthesis KEGG 22 0.000 7 0.000

monoterpenoid biosynthesis TAIR-GO 19 0.000 2 0.000

monoterpene biosynthesis LitPath 19 0.000 2 0.000

detoxification FunCat 13 0.000 3 0.000

Methane metabolism KEGG 12 0.000 6 0.000

Phenylalanine metabolism KEGG 12 0.000 6 0.000

Prostaglandin and leukotriene metabolism KEGG 12 0.000 6 0.000

detoxification involving cytochrome P450 FunCat 11 0.000 2 0.000

Flavonoid and anthocyanin metabolism BioPath 10 0.000 3 0.000

Phenylpropanoid Metabolism BioPath 10 0.000 3 0.000










fatty acid metabolism TAIR-GO 10 0.000 1 0.003










Ascorbate and aldarate metabolism KEGG 10 0.000 1 0.016










Fluorene degradation KEGG 10 0.000 1 0.006










gamma-Hexachlorocyclohexane degradation KEGG 10 0.000 1 0.008










Fatty acid elongation and wax and cutin metabolism AcylLipid 10 0.000 1 0.187










fatty acid modulation LitPath 10 0.000 1 0.001










sequiterpene biosynthesis LitPath 10 0.000 1 0.001










auxin biosynthesis TAIR-GO 9 0.000 1 0.000










IAA biosynthesis AraCyc 9 0.000 1 0.001










monoterpene biosynthesis AraCyc 9 0.000 1 0.000










plant monoterpene biosynthesis AraCyc 9 0.000 1 0.000










flavonol biosynthesis AraCyc 8 0.000 2 0.000










secondary metabolism FunCat 8 0.000 4 0.000










storage protein FunCat 8 0.000 2 0.000










flavonoid, anthocyanin, and proanthocyanidin biosynthesis LitPath 8 0.002 2 0.004










proanthocyanidin biosynthesis LitPath 8 0.002 2 0.004










pentacyclic triterpenoid biosynthesis TAIR-GO 7 0.000 1 0.000










isoprenoid biosynthesis FunCat 7 0.000 1 0.057










lipid, fatty acid and isoprenoid biosynthesis FunCat 7 0.000 1 0.044










Biosynthesis of steroids KEGG 7 0.000 1 0.051










triterpene biosynthesis LitPath 7 0.001 1 0.039












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP71A19 (At4g13290)







max. difference between log2-ratios: 7.2











max. difference between log2-ratios excluding lowest and highest 5%: 2.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






mono-/sesqui-/di-terpene biosynthesis LitPath 29 0.000 3 0.015
terpenoid metabolism LitPath 29 0.000 3 0.016










Stilbene, coumarine and lignin biosynthesis KEGG 22 0.000 7 0.000










monoterpenoid biosynthesis TAIR-GO 19 0.000 2 0.000










monoterpene biosynthesis LitPath 19 0.000 2 0.000










detoxification FunCat 13 0.000 3 0.000










Methane metabolism KEGG 12 0.000 6 0.000










Phenylalanine metabolism KEGG 12 0.000 6 0.000










Prostaglandin and leukotriene metabolism KEGG 12 0.000 6 0.000










detoxification involving cytochrome P450 FunCat 11 0.000 2 0.000










Flavonoid and anthocyanin metabolism BioPath 10 0.000 3 0.000










Phenylpropanoid Metabolism BioPath 10 0.000 3 0.000










fatty acid metabolism TAIR-GO 10 0.000 1 0.003










Ascorbate and aldarate metabolism KEGG 10 0.000 1 0.016










Fluorene degradation KEGG 10 0.000 1 0.006










gamma-Hexachlorocyclohexane degradation KEGG 10 0.000 1 0.008










Fatty acid elongation and wax and cutin metabolism AcylLipid 10 0.000 1 0.187










fatty acid modulation LitPath 10 0.000 1 0.001










sequiterpene biosynthesis LitPath 10 0.000 1 0.001










auxin biosynthesis TAIR-GO 9 0.000 1 0.000










IAA biosynthesis AraCyc 9 0.000 1 0.001










monoterpene biosynthesis AraCyc 9 0.000 1 0.000










plant monoterpene biosynthesis AraCyc 9 0.000 1 0.000










flavonol biosynthesis AraCyc 8 0.000 2 0.000










secondary metabolism FunCat 8 0.000 4 0.000










storage protein FunCat 8 0.000 2 0.000










flavonoid, anthocyanin, and proanthocyanidin biosynthesis LitPath 8 0.002 2 0.004










proanthocyanidin biosynthesis LitPath 8 0.002 2 0.004










pentacyclic triterpenoid biosynthesis TAIR-GO 7 0.000 1 0.000










isoprenoid biosynthesis FunCat 7 0.000 1 0.057










lipid, fatty acid and isoprenoid biosynthesis FunCat 7 0.000 1 0.044










Biosynthesis of steroids KEGG 7 0.000 1 0.051










triterpene biosynthesis LitPath 7 0.001 1 0.039












































Pathways co-expressed in the Hormone etc. data set (with more than 7 annotation points)
CYP71A19 (At4g13290)







max. difference between log2-ratios: 9.2











max. difference between log2-ratios excluding lowest and highest 5%: 4.6











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Phenylpropanoid Metabolism BioPath 28 0.000 4 0.009





Lipid signaling AcylLipid 18 0.000 3 0.015




Biosynthesis of Amino Acids and Derivatives BioPath 16 0.017 2 0.140




Glutathione metabolism BioPath 16 0.000 2 0.016




cysteine biosynthesis I AraCyc 16 0.000 2 0.002




sulfate assimilation III AraCyc 16 0.000 2 0.001




amino acid metabolism FunCat 16 0.000 2 0.048




Cysteine metabolism KEGG 16 0.000 2 0.000




Sulfur metabolism KEGG 16 0.000 2 0.000




Phenylpropanoid pathway LitPath 16 0.004 4 0.016




anthocyanin biosynthesis AraCyc 14 0.000 2 0.000










Flavonoid biosynthesis KEGG 14 0.000 2 0.000










core phenylpropanoid metabolism BioPath 12 0.000 2 0.005










lignin biosynthesis AraCyc 12 0.000 2 0.002










Stilbene, coumarine and lignin biosynthesis KEGG 12 0.000 2 0.013










Chlorophyll biosynthesis and breakdown BioPath 10 0.000 1 0.027










Flavonoid and anthocyanin metabolism BioPath 10 0.000 1 0.069










Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 10 0.005 2 0.013










Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 10 0.046 1 0.139










sterol biosynthesis BioPath 10 0.000 2 0.001










anthocyanin biosynthesis TAIR-GO 10 0.000 1 0.000










chlorophyll catabolism TAIR-GO 10 0.000 1 0.000










cysteine biosynthesis TAIR-GO 10 0.000 1 0.000










lignin biosynthesis TAIR-GO 10 0.000 1 0.001










phenylpropanoid biosynthesis TAIR-GO 10 0.000 1 0.000










response to stress TAIR-GO 10 0.000 1 0.000










tryptophan catabolism TAIR-GO 10 0.000 1 0.000










glucosinolate biosynthesis from tryptophan AraCyc 10 0.000 1 0.000










IAA biosynthesis AraCyc 10 0.000 1 0.002










IAA biosynthesis I AraCyc 10 0.000 1 0.001










lipoxygenase pathway AraCyc 10 0.000 1 0.002










biogenesis of cell wall FunCat 10 0.000 1 0.092










biosynthesis of phenylpropanoids FunCat 10 0.000 1 0.030










biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine FunCat 10 0.000 1 0.030










lipid, fatty acid and isoprenoid metabolism FunCat 10 0.000 1 0.042










Ascorbate and aldarate metabolism KEGG 10 0.000 1 0.007










Fluorene degradation KEGG 10 0.000 1 0.003










gamma-Hexachlorocyclohexane degradation KEGG 10 0.000 1 0.003










Selenoamino acid metabolism KEGG 10 0.000 1 0.010










anthocyanin biosynthesis LitPath 10 0.000 1 0.000










chlorophyll and phytochromobilin metabolism LitPath 10 0.033 1 0.145










chlorophyll catabolism LitPath 10 0.000 1 0.001










flavonoid, anthocyanin, and proanthocyanidin biosynthesis LitPath 10 0.000 1 0.020










Glucosinolate Metabolism LitPath 10 0.002 1 0.055










oxylipin pathway LitPath 10 0.000 1 0.000










proanthocyanidin biosynthesis LitPath 10 0.000 1 0.020










Leaf Glycerolipid Biosynthesis in cytosol / ER BioPath 9 0.000 1 0.023










Synthesis of membrane lipids in endomembrane system AcylLipid 9 0.001 1 0.077










storage protein FunCat 8 0.000 2 0.000





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP71A19 (At4g13290)







max. difference between log2-ratios: 13.6











max. difference between log2-ratios excluding lowest and highest 5%: 4.1











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Biosynthesis of steroids KEGG 19 0.000 4 0.000



secondary metabolism FunCat 15 0.000 4 0.000


Phenylpropanoid Metabolism BioPath 13 0.005 3 0.057


lignin biosynthesis AraCyc 12 0.000 2 0.001


Phenylpropanoid pathway LitPath 12 0.002 2 0.185


triterpene, sterol, and brassinosteroid metabolism LitPath 11 0.006 2 0.128


cellulose biosynthesis BioPath 10 0.000 1 0.057


core phenylpropanoid metabolism BioPath 10 0.000 1 0.057


hemicellulose biosynthesis BioPath 10 0.000 1 0.008










lignin biosynthesis TAIR-GO 10 0.000 1 0.000










Biosynthesis of prenyl diphosphates BioPath 8 0.000 2 0.006










Leaf Glycerolipid Biosynthesis in Plastid BioPath 8 0.001 2 0.012










Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 8 0.030 2 0.033










Terpenoid biosynthesis KEGG 8 0.000 2 0.000










Synthesis of fatty acids in plastids AcylLipid 8 0.000 2 0.000










prenyl diphosphate (GPP,FPP, GGPP) biosynthesis LitPath 8 0.000 2 0.002










pentacyclic triterpenoid biosynthesis TAIR-GO 7 0.000 1 0.000










triterpene biosynthesis LitPath 7 0.000 1 0.014



























page created by Vincent Sauveplane 04/28/06