| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP71B12 and/or CYP71B13 (At5g25130; Atg25140) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| there are only co-expressed pathways in the hormone data set | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points) | CYP71B12 and/or CYP71B13 (At5g25130; Atg25140) | |||||||||||||||
| max. difference between log2-ratios: | 4.9 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 3.3 | |||||||||||||||
| Link to organ heatmap | ||||||||||||||||
| there are no co-expressed pathways with r-value greater than 0.5 |
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| Pathways co-expressed in the Stress data set ( with more than 10 annotation points) | CYP71B12 and/or CYP71B13 (At5g25130; Atg25140) | |||||||||||||||
| max. difference between log2-ratios: | 5.8 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.6 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
| there are no co-expressed pathways with r-value greater than 0.5 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points) | CYP71B12 and/or CYP71B13 (At5g25130; Atg25140) | |||||||||||||||
| max. difference between log2-ratios: | 3.0 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.8 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| Biosynthesis of prenyl diphosphates | BioPath | 10 | 0.000 | 1 | 0.007 |
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| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | BioPath | 10 | 0.000 | 1 | 0.024 | |||||||||||
| biogenesis of chloroplast | FunCat | 10 | 0.000 | 1 | 0.002 | |||||||||||
| biosynthesis of derivatives of homoisopentenyl pyrophosphate | FunCat | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Biosynthesis of steroids | KEGG | 10 | 0.000 | 1 | 0.001 | |||||||||||
| Terpenoid biosynthesis | KEGG | 10 | 0.000 | 1 | 0.000 | |||||||||||
| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis | LitPath | 10 | 0.000 | 1 | 0.001 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) | CYP71B12 and/or CYP71B13 (At5g25130; Atg25140) | |||||||||||||||
| max. difference between log2-ratios: | 5.2 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.4 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| there are no co-expressed pathways with r-value greater than 0.5 |
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| page created by Vincent Sauveplane | 05/04/06 | |||||||||||||||