Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP71B19 / CYP71B20 (At3g26170 / At3g26180)	save all data as Tab Delimited Table
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Pathways co-expressed inthe 3 applicable data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no co-expressed pathways in all three data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)						CYP71B19 / CYP71B20 (At3g26170 / At3g26180)
max. difference between log2-ratios:				6.7
max. difference between log2-ratios excluding lowest and highest 5%:				5.7
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Photosystems	BioPath	372	0.000	55	0.000
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)	BioPath	188	0.000	22	0.000
additional photosystem II components	BioPath	155	0.000	21	0.000
biogenesis of chloroplast	FunCat	151	0.000	25	0.000
Photosynthesis	KEGG	145	0.000	24	0.000
photosynthesis	FunCat	142	0.000	21	0.000
Photosystem I	BioPath	131	0.000	22	0.000
Chlorophyll a/b binding proteins	BioPath	122	0.000	15	0.000
glycolysis and gluconeogenesis	FunCat	99	0.000	15	0.020
transport	FunCat	99	0.000	16	0.000
Carbon fixation	KEGG	96	0.000	13	0.000
photosystem I	TAIR-GO	84	0.000	10	0.000
Chlorophyll biosynthesis and breakdown	BioPath	83	0.000	9	0.005
chlorophyll and phytochromobilin metabolism	LitPath	83	0.000	9	0.000
Photosystem II	BioPath	73	0.000	10	0.006
Porphyrin and chlorophyll metabolism	KEGG	73	0.000	9	0.000
Biosynthesis of steroids	KEGG	63	0.000	8	0.000
Pathway for nuclear-encoded, thylakoid-localized proteins	BioPath	62	0.000	8	0.000
photosystem II	TAIR-GO	61	0.000	7	0.000
chlorophyll binding	TAIR-GO	60	0.000	7	0.000
chlorophyll biosynthesis	TAIR-GO	59	0.000	6	0.000
Folding, Sorting and Degradation	KEGG	58	0.000	8	0.095
gluconeogenesis	AraCyc	57	0.000	8	0.008
acetate fermentation	AraCyc	56	0.000	10	0.019
Calvin cycle	AraCyc	56	0.000	8	0.003
photorespiration	AraCyc	56	0.000	13	0.000
fructose degradation (anaerobic)	AraCyc	52	0.000	9	0.028
glycolysis IV	AraCyc	52	0.000	9	0.030
sorbitol fermentation	AraCyc	52	0.000	9	0.037
chlorophyll biosynthesis	AraCyc	50	0.000	6	0.122
transport facilitation	FunCat	50	0.000	8	0.000
Carotenoid and abscisic acid metabolism	LitPath	50	0.000	6	0.001
chlorophyll biosynthesis	LitPath	49	0.000	5	0.000
light harvesting complex	BioPath	48	0.000	6	0.000
Protein export	KEGG	45	0.000	6	0.000
Carotenoid biosynthesis	BioPath	44	0.000	5	0.001
photosynthesis	TAIR-GO	44	0.000	6	0.003
carotenoid biosynthesis	AraCyc	44	0.000	5	0.000
energy	FunCat	44	0.000	6	0.000
respiration	FunCat	44	0.000	6	0.000
Glycolysis / Gluconeogenesis	KEGG	44	0.000	7	0.041
carotenid biosynthesis	LitPath	44	0.000	5	0.000
Pentose phosphate pathway	KEGG	42	0.000	6	0.004
Miscellaneous acyl lipid metabolism	AcylLipid	42	0.000	8	0.105
Chloroplastic protein turnover	BioPath	40	0.000	7	0.000
aerobic respiration	FunCat	40	0.000	5	0.001
hypersensitive response	TAIR-GO	38	0.000	4	0.000
glycine biosynthesis I	AraCyc	38	0.000	9	0.002
superpathway of serine and glycine biosynthesis II	AraCyc	38	0.000	9	0.000
calmodulin binding	TAIR-GO	37	0.000	5	0.001
chloroplast thylakoid membrane protein import	TAIR-GO	37	0.000	4	0.000
Pathways co-expressed in the Stress data set ( with more than 10 annotation points)						CYP71B19 / CYP71B20 (At3g26170 / At3g26180)
max. difference between log2-ratios:				6.6
max. difference between log2-ratios excluding lowest and highest 5%:				1.8
						Link to stress heatmap
There are no pathways co-expressed with r-value greater than 0.5 in this data set
Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)						CYP71B19 / CYP71B20 (At3g26170 / At3g26180)
max. difference between log2-ratios:				2.3
max. difference between log2-ratios excluding lowest and highest 5%:				1.5
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Valine, leucine and isoleucine degradation	KEGG	16	0.000	3	0.000
metabolism of acyl-lipids in mitochondria	AcylLipid	14	0.000	2	0.000
amino acid metabolism	FunCat	12	0.000	2	0.004
lipid, fatty acid and isoprenoid metabolism	FunCat	12	0.000	2	0.000
Benzoate degradation via CoA ligation	KEGG	12	0.000	2	0.002
fatty acid beta oxidation complex	BioPath	10	0.000	1	0.000
Gluconeogenesis from lipids in seeds	BioPath	10	0.000	1	0.002
development	TAIR-GO	10	0.000	1	0.003
embryonic development	TAIR-GO	10	0.000	1	0.001
embryonic development (sensu Magnoliophyta)	TAIR-GO	10	0.000	1	0.000
fatty acid beta-oxidation	TAIR-GO	10	0.000	1	0.000
leucine catabolism	TAIR-GO	10	0.000	1	0.000
leucine degradation I	AraCyc	10	0.000	1	0.000
leucine degradation II	AraCyc	10	0.000	1	0.000
Fatty acid metabolism	KEGG	10	0.000	1	0.005
Lysine degradation	KEGG	10	0.000	1	0.002
Tryptophan metabolism	KEGG	10	0.000	1	0.005
Degradation of storage lipids and straight fatty acids	AcylLipid	10	0.000	1	0.031
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP71B19 / CYP71B20 (At3g26170 / At3g26180)
max. difference between log2-ratios:				5.8
max. difference between log2-ratios excluding lowest and highest 5%:				2.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
phenylpropanoid metabolism	TAIR-GO	9	0.000	1	0.000
beta-Alanine metabolism	KEGG	9	0.000	1	0.001
Nucleotide Metabolism	KEGG	9	0.000	1	0.012
Pantothenate and CoA biosynthesis	KEGG	9	0.000	1	0.001
Pyrimidine metabolism	KEGG	9	0.000	1	0.004
page created by Vincent Sauveplane	05/11/06