Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71B26 (At3g26290) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.







Pathway Source Sum of scores Sum of genes







Tryptophan metabolism KEGG 69 11.000







Bile acid biosynthesis KEGG 60 8.000







starch biosynthesis AraCyc 40 4.000












To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.









































For more information on how these pathway maps were generated please read the methods page









































































Pathways co-expressed in the Organ and Tissue data set (with more than 20 annotation points)
CYP71B26 (At3g26290)







max. difference between log2-ratios: 5.9











max. difference between log2-ratios excluding lowest and highest 5%: 5.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Photosystems BioPath 257 0.000 37 0.000


Photosystem I BioPath 117 0.000 20 0.000

Photosynthesis KEGG 115 0.000 18 0.000

Chlorophyll a/b binding proteins BioPath 104 0.000 13 0.000

additional photosystem II components BioPath 100 0.000 12 0.000

biogenesis of chloroplast FunCat 86 0.000 12 0.000

photosynthesis FunCat 73 0.000 10 0.000

photosystem I TAIR-GO 67 0.000 8 0.000

transport FunCat 64 0.000 10 0.000

Photosystem II BioPath 59 0.000 8 0.000

chlorophyll binding TAIR-GO 52 0.000 6 0.000

photosystem II TAIR-GO 51 0.000 6 0.000

Carbon fixation KEGG 51 0.000 6 0.000

respiration FunCat 44 0.000 6 0.000










aerobic respiration FunCat 40 0.000 5 0.000










photosystem II type I chlorophyll a /b binding protein BioPath 36 0.000 4 0.000










energy FunCat 34 0.000 4 0.000










photosystem I reaction center BioPath 32 0.000 7 0.000










light harvesting complex BioPath 30 0.000 4 0.000










photosynthesis TAIR-GO 30 0.000 4 0.004










photorespiration TAIR-GO 28 0.000 4 0.000










photorespiration AraCyc 28 0.000 4 0.003










photosystem I subunit precursor BioPath 26 0.000 5 0.000










Calvin cycle AraCyc 26 0.000 3 0.028










gluconeogenesis AraCyc 26 0.000 3 0.048










transport facilitation FunCat 26 0.000 4 0.000










assimilation of ammonia, metabolism of the glutamate group FunCat 24 0.000 3 0.006










electron transport and membrane-associated energy conservation FunCat 24 0.000 3 0.000










Biosynthesis of steroids KEGG 24 0.000 3 0.012










Nitrogen metabolism KEGG 23 0.000 3 0.003












































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP71B26 (At3g26290)







max. difference between log2-ratios: 11.3











max. difference between log2-ratios excluding lowest and highest 5%: 2.5











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Cell Wall Carbohydrate Metabolism BioPath 22 0.018 3 0.358
C-compound and carbohydrate utilization FunCat 20 0.000 2 0.000
Phenylpropanoid Metabolism BioPath 18 0.003 2 0.201
indoleacetic acid biosynthesis TAIR-GO 18 0.000 2 0.000
IAA biosynthesis AraCyc 18 0.000 2 0.000
IAA biosynthesis I AraCyc 18 0.000 2 0.000
plant / fungal specific systemic sensing and response FunCat 18 0.000 2 0.000
plant hormonal regulation FunCat 18 0.000 2 0.000
Bile acid biosynthesis KEGG 17 0.000 2 0.000
Fatty acid metabolism KEGG 17 0.000 2 0.003










Glycerolipid metabolism KEGG 17 0.000 2 0.003










Glycolysis / Gluconeogenesis KEGG 17 0.000 2 0.029










Pyruvate metabolism KEGG 17 0.000 2 0.024










Tryptophan metabolism KEGG 17 0.000 2 0.003










vitamin E biosynthesis AraCyc 14 0.000 2 0.000










ascorbic acid biosynthesis BioPath 12 0.000 2 0.001










secondary metabolism FunCat 12 0.000 2 0.008










Fatty acid elongation and wax and cutin metabolism AcylLipid 12 0.000 2 0.053










Gluconeogenesis from lipids in seeds BioPath 11 0.000 2 0.022










Tyrosine metabolism KEGG 11 0.000 2 0.005












































Pathways co-expressed in the Hormone etc. data set (with more than 14 annotation points)
CYP71B26 (At3g26290)







max. difference between log2-ratios: 3.7











max. difference between log2-ratios excluding lowest and highest 5%: 1.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






beta-Alanine metabolism KEGG 31 0.000 6 0.000





Biosynthesis of Amino Acids and Derivatives BioPath 30 0.000 3 0.075




Stilbene, coumarine and lignin biosynthesis KEGG 30 0.000 3 0.179




Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 25 0.000 3 0.008




lignin biosynthesis AraCyc 24 0.000 4 0.001




Glutathione metabolism KEGG 24 0.000 3 0.014




Miscellaneous acyl lipid metabolism AcylLipid 24 0.000 6 0.005




Phenylpropanoid pathway LitPath 24 0.000 4 0.016




Urea cycle and metabolism of amino groups KEGG 22 0.000 3 0.002




Phenylpropanoid Metabolism BioPath 20 0.030 2 0.236




Prolin/Hydroxyproline from glutamate BioPath 20 0.000 2 0.000




hyperosmotic salinity response TAIR-GO 20 0.000 2 0.000




proline biosynthesis TAIR-GO 20 0.000 2 0.000




response to abscisic acid stimulus TAIR-GO 20 0.000 2 0.001










phenylalanine degradation I AraCyc 20 0.000 4 0.000










tyrosine degradation AraCyc 20 0.000 4 0.000










biogenesis of cell wall FunCat 20 0.000 2 0.021










C-compound and carbohydrate utilization FunCat 20 0.000 2 0.000










secondary metabolism FunCat 20 0.000 2 0.017










Tyrosine metabolism KEGG 20 0.000 4 0.002










Intermediary Carbon Metabolism BioPath 18 0.020 2 0.197










response to water deprivation TAIR-GO 18 0.000 2 0.000










Fatty acid metabolism KEGG 18 0.000 3 0.006










Glycerolipid metabolism KEGG 16 0.000 3 0.006










Pyruvate metabolism KEGG 16 0.030 3 0.076










Nucleotide Metabolism KEGG 15 0.021 2 0.241










Pantothenate and CoA biosynthesis KEGG 15 0.000 2 0.009










Pyrimidine metabolism KEGG 15 0.000 2 0.059





























































Pathways co-expressed in the Mutant data set (with more than 30 annotation points)
CYP71B26 (At3g26290)







max. difference between log2-ratios: 8.7











max. difference between log2-ratios excluding lowest and highest 5%: 2.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






C-compound and carbohydrate metabolism FunCat 155 0.000 28 0.037



Photosystems BioPath 138 0.000 17 0.003


Intermediary Carbon Metabolism BioPath 118 0.000 20 0.021


biogenesis of chloroplast FunCat 96 0.000 13 0.000


Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 93 0.000 12 0.020


transport FunCat 75 0.000 14 0.000


Chlorophyll a/b binding proteins BioPath 72 0.000 9 0.000


Carbon fixation KEGG 71 0.000 12 0.001


photosynthesis FunCat 70 0.000 11 0.000


additional photosystem II components BioPath 66 0.000 8 0.004


Glycolysis / Gluconeogenesis KEGG 65 0.000 11 0.009


Chlorophyll biosynthesis and breakdown BioPath 56 0.000 6 0.018


Calvin cycle AraCyc 56 0.000 10 0.000


chlorophyll and phytochromobilin metabolism LitPath 50 0.000 5 0.011










development TAIR-GO 47 0.000 6 0.023










Oxidative phosphorylation KEGG 47 0.000 11 0.006










Pyruvate metabolism KEGG 47 0.026 6 0.267










chlorophyll biosynthesis TAIR-GO 46 0.000 5 0.000










chlorophyll biosynthesis AraCyc 46 0.000 5 0.173










chlorophyll binding TAIR-GO 42 0.000 5 0.000










Glutamate metabolism KEGG 42 0.000 5 0.088










Pentose phosphate pathway KEGG 42 0.000 9 0.001










Translation factors KEGG 42 0.005 8 0.170










Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 40 0.000 4 0.103










Citrate cycle (TCA cycle) KEGG 38 0.000 5 0.073










Selenoamino acid metabolism KEGG 36 0.000 4 0.062










Glycerolipid metabolism KEGG 35 0.000 5 0.029










Sulfur metabolism KEGG 35 0.000 4 0.018










Nitrogen metabolism KEGG 33 0.008 4 0.078










acetate fermentation AraCyc 32 0.039 8 0.055










aerobic respiration FunCat 32 0.000 5 0.001










energy FunCat 32 0.000 6 0.000










respiration FunCat 32 0.000 5 0.001










Glutathione metabolism KEGG 32 0.008 4 0.186










transport facilitation FunCat 31 0.000 6 0.000










Fatty acid metabolism KEGG 31 0.016 4 0.096



























page created by Vincent Sauveplane 06/26/06