Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)





CYP71B3 / CYP71B24 (At3g26220 / At3g26230) save all data as Tab Delimited Table











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Pathways co-expressed the 2 applicable data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.








Pathway Source Sum of scores Sum of genes








Glutathione metabolism BioPath 24 4








Glutathione metabolism BioPath 24 4


























To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.












































For more information on how these pathway maps were generated please read the methods page














































































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP71B3 / CYP71B24 (At3g26220 / At3g26230)








max. difference between log2-ratios: 5.9












max. difference between log2-ratios excluding lowest and highest 5%: 4.4












Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap







Miscellaneous acyl lipid metabolism AcylLipid 20 0.000 4 0.006



Biosynthesis of Amino Acids and Derivatives BioPath 12 0.001 2 0.043


Glutathione metabolism BioPath 12 0.000 2 0.004


toxin catabolism TAIR-GO 12 0.000 2 0.000


Glutathione metabolism KEGG 12 0.000 2 0.000


Chloroplastic protein turnover BioPath 10 0.000 1 0.001


ERD1 protease (ClpC-like) BioPath 10 0.000 1 0.000


ATP-dependent proteolysis TAIR-GO 10 0.000 1 0.001


biosynthesis of phenylpropanoids FunCat 10 0.000 1 0.007











biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine FunCat 10 0.000 1 0.007











stress response FunCat 10 0.000 1 0.000











cellulose biosynthesis BioPath 8 0.000 1 0.020











hemicellulose biosynthesis BioPath 8 0.000 1 0.003











Fructose and mannose metabolism KEGG 8 0.000 1 0.013











Glycan Biosynthesis and Metabolism KEGG 8 0.000 1 0.024











Glycerolipid metabolism KEGG 8 0.000 1 0.007















































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP71B3 / CYP71B24 (At3g26220 / At3g26230)








max. difference between log2-ratios: 6.4












max. difference between log2-ratios excluding lowest and highest 5%: 3.3


















Link to stress heatmap







there are no co-expressed pathways with more than 6 annotation points
























Pathways co-expressed in the Hormone etc. data set (with more than 8 annotation points)
CYP71B3 / CYP71B24 (At3g26220 / At3g26230)








max. difference between log2-ratios: 3.4












max. difference between log2-ratios excluding lowest and highest 5%: 2.5












Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap







amino acid metabolism FunCat 21 0.000 3 0.000






Valine, leucine and isoleucine degradation KEGG 16 0.000 3 0.000





metabolism of acyl-lipids in mitochondria AcylLipid 14 0.000 2 0.000





Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 10 0.000 1 0.003











Regulatory enzymes BioPath 10 0.000 1 0.000











carotenoid biosynthesis TAIR-GO 10 0.000 1 0.000











leucine catabolism TAIR-GO 10 0.000 1 0.000











plastid organization and biogenesis TAIR-GO 10 0.000 1 0.000











response to high light intensity TAIR-GO 10 0.000 1 0.000











response to temperature TAIR-GO 10 0.000 1 0.000











leucine degradation I AraCyc 10 0.000 1 0.003











leucine degradation II AraCyc 10 0.000 1 0.001











Accessory protein/regulatory protein LitPath 10 0.000 1 0.000











hyperosmotic salinity response TAIR-GO 9 0.000 1 0.000











proline biosynthesis TAIR-GO 9 0.000 1 0.000











arginine degradation II AraCyc 9 0.000 1 0.002











arginine degradation III AraCyc 9 0.000 1 0.000











arginine degradation V AraCyc 9 0.000 1 0.001











biosynthesis of proto- and siroheme AraCyc 9 0.000 1 0.007











biotin biosynthesis I AraCyc 9 0.000 1 0.001











chlorophyll biosynthesis AraCyc 9 0.000 1 0.012











glutamate degradation I AraCyc 9 0.000 1 0.000











lysine biosynthesis I AraCyc 9 0.000 1 0.001











Arginine and proline metabolism KEGG 9 0.000 1 0.002











Urea cycle and metabolism of amino groups KEGG 9 0.000 1 0.001

































































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP71B3 / CYP71B24 (At3g26220 / At3g26230)








max. difference between log2-ratios: 6.9












max. difference between log2-ratios excluding lowest and highest 5%: 3.8


















Link to mutants heatmap







there are no co-expressed pathways with more than 6 annotation points


















page created by Vincent Sauveplane 06/26/06