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| Pathways co-expressed in all the 2 data sets with co-expressed pathways (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| C-compound and carbohydrate metabolism |
FunCat |
65 |
13 |
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| Intermediary Carbon Metabolism |
BioPath |
56 |
9 |
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| metabolism of acyl-lipids in mitochondria |
AcylLipid |
30 |
3 |
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| lipoic acid metabolism |
TAIR-GO |
20 |
2 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) |
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CYP71B36 (At3g26320) |
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| max. difference between log2-ratios: |
4.3 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
3.2 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| C-compound and carbohydrate metabolism |
FunCat |
12 |
0.005 |
2 |
0.168 |
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| defense related proteins |
FunCat |
11 |
0.000 |
3 |
0.000 |
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| disease, virulence and defense |
FunCat |
11 |
0.000 |
3 |
0.000 |
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| Intermediary Carbon Metabolism |
BioPath |
10 |
0.000 |
2 |
0.002 |
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| lipoic acid metabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| Ion channels |
KEGG |
10 |
0.000 |
5 |
0.000 |
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| Ligand-Receptor Interaction |
KEGG |
10 |
0.000 |
5 |
0.000 |
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| Starch and sucrose metabolism |
KEGG |
10 |
0.000 |
2 |
0.009 |
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| metabolism of acyl-lipids in mitochondria |
AcylLipid |
10 |
0.000 |
1 |
0.006 |
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| Pathways co-expressed in the Stress data set ( with more than 20 annotation points) |
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CYP71B36 (At3g26320) |
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| max. difference between log2-ratios: |
5.2 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
3.0 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to stress heatmap |
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| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) |
BioPath |
59 |
0.000 |
9 |
0.000 |
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| C-compound and carbohydrate metabolism |
FunCat |
53 |
0.000 |
11 |
0.037 |
| Intermediary Carbon Metabolism |
BioPath |
46 |
0.000 |
7 |
0.175 |
| Photosystems |
BioPath |
44 |
0.000 |
9 |
0.003 |
| biogenesis of chloroplast |
FunCat |
42 |
0.000 |
8 |
0.000 |
| photosynthesis |
FunCat |
40 |
0.000 |
9 |
0.000 |
| mRNA processing in chloroplast |
BioPath |
38 |
0.000 |
7 |
0.000 |
| Chlorophyll biosynthesis and breakdown |
BioPath |
31 |
0.000 |
4 |
0.005 |
| additional photosystem II components |
BioPath |
28 |
0.000 |
6 |
0.000 |
| glycolysis and gluconeogenesis |
FunCat |
28 |
0.000 |
6 |
0.031 |
| chlorophyll biosynthesis |
TAIR-GO |
25 |
0.000 |
3 |
0.000 |
| Porphyrin and chlorophyll metabolism |
KEGG |
25 |
0.000 |
3 |
0.002 |
| chlorophyll and phytochromobilin metabolism |
LitPath |
25 |
0.000 |
3 |
0.028 |
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| Transcription (chloroplast) |
BioPath |
24 |
0.000 |
3 |
0.000 |
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| transcription initiation |
TAIR-GO |
24 |
0.000 |
3 |
0.000 |
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| Glycolysis / Gluconeogenesis |
KEGG |
24 |
0.000 |
4 |
0.020 |
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| Pentose phosphate pathway |
KEGG |
23 |
0.000 |
5 |
0.000 |
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