Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71B37 (At3g26330) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
















there are no co-expressed pathways common to all data sets



































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP71B37 (At3g26330)







max. difference between log2-ratios: 6.6











max. difference between log2-ratios excluding lowest and highest 5%: 4.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Stilbene, coumarine and lignin biosynthesis KEGG 19 0.000 3 0.000


Ascorbate and aldarate metabolism KEGG 17 0.000 2 0.000

Fluorene degradation KEGG 17 0.000 2 0.000

gamma-Hexachlorocyclohexane degradation KEGG 17 0.000 2 0.000

Leaf Glycerolipid Biosynthesis BioPath 10 0.000 3 0.001

Leaf Glycerolipid Biosynthesis in Plastid BioPath 10 0.000 3 0.000

fatty acid metabolism TAIR-GO 10 0.000 1 0.002

detoxification FunCat 10 0.000 1 0.000










detoxification involving cytochrome P450 FunCat 10 0.000 1 0.001










Fatty acid elongation and wax and cutin metabolism AcylLipid 10 0.000 1 0.232










fatty acid modulation LitPath 10 0.000 1 0.000










Synthesis of fatty acids in plastids AcylLipid 8 0.001 2 0.019










brassinosteroid biosynthesis TAIR-GO 7 0.000 1 0.001










growth TAIR-GO 7 0.000 1 0.002










leaf morphogenesis TAIR-GO 7 0.000 1 0.000










monopolar cell growth TAIR-GO 7 0.000 1 0.000










steroid biosynthesis TAIR-GO 7 0.000 1 0.001










biosynthesis of phenylpropanoids FunCat 7 0.000 1 0.006










biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine FunCat 7 0.000 1 0.006










brassinosteroid biosynthesis LitPath 7 0.000 1 0.013










triterpene, sterol, and brassinosteroid metabolism LitPath 7 0.003 1 0.111












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP71B37 (At3g26330)







max. difference between log2-ratios: 7.7











max. difference between log2-ratios excluding lowest and highest 5%: 2.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






gibberellic acid biosynthesis TAIR-GO 10 0.000 1 0.000
seed germination TAIR-GO 10 0.000 1 0.000
Diterpenoid biosynthesis KEGG 10 0.000 1 0.000
Gibberellin metabolism LitPath 10 0.000 1 0.003










giberelin biosynthesis LitPath 10 0.000 1 0.002










trehalose biosynthesis TAIR-GO 9 0.000 1 0.000










trehalose biosynthesis I AraCyc 9 0.000 1 0.001










trehalose biosynthesis II AraCyc 9 0.000 1 0.001










trehalose biosynthesis III AraCyc 9 0.000 1 0.000










C-compound and carbohydrate metabolism FunCat 9 0.000 1 0.038










energy FunCat 9 0.000 1 0.000










metabolism of energy reserves (e.g. glycogen, trehalose) FunCat 9 0.000 1 0.000












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP71B37 (At3g26330)







max. difference between log2-ratios: 3.9











max. difference between log2-ratios excluding lowest and highest 5%: 1.6











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Cell Wall Carbohydrate Metabolism BioPath 10 0.000 1 0.168





sucrose metabolism BioPath 10 0.000 1 0.001




tryptophan catabolism TAIR-GO 10 0.000 1 0.000




glucosinolate biosynthesis from tryptophan AraCyc 10 0.000 1 0.000




IAA biosynthesis AraCyc 10 0.000 1 0.000




IAA biosynthesis I AraCyc 10 0.000 1 0.000










C-compound and carbohydrate metabolism FunCat 10 0.002 1 0.172










glycolysis and gluconeogenesis FunCat 10 0.000 1 0.042










Galactose metabolism KEGG 10 0.000 1 0.003










Starch and sucrose metabolism KEGG 10 0.000 1 0.015










Glucosinolate Metabolism LitPath 10 0.000 1 0.019










secondary metabolism FunCat 9 0.000 2 0.001










triterpene, sterol, and brassinosteroid metabolism LitPath 9 0.001 2 0.036










pentacyclic triterpenoid biosynthesis TAIR-GO 7 0.000 1 0.000










Biosynthesis of steroids KEGG 7 0.000 1 0.006










triterpene biosynthesis LitPath 7 0.000 1 0.005





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP71B37 (At3g26330)







max. difference between log2-ratios: 3.7











max. difference between log2-ratios excluding lowest and highest 5%: 2.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






C-compound and carbohydrate metabolism FunCat 42 0.001 5 0.243



Ribosome KEGG 40 0.000 7 0.010


Intermediary Carbon Metabolism BioPath 36 0.000 4 0.022


glycolysis and gluconeogenesis FunCat 36 0.000 4 0.038


Glycolysis / Gluconeogenesis KEGG 26 0.000 3 0.013


Photosystems BioPath 22 0.000 3 0.024


isoprenoid biosynthesis FunCat 19 0.000 4 0.003


lipid, fatty acid and isoprenoid biosynthesis FunCat 19 0.000 4 0.001


acetate fermentation AraCyc 18 0.000 3 0.001


additional photosystem II components BioPath 16 0.000 2 0.007


ATP synthase components BioPath 16 0.000 2 0.000


Gluconeogenesis from lipids in seeds BioPath 16 0.000 2 0.033


ATP synthesis coupled proton transport TAIR-GO 16 0.000 2 0.000










proton transport TAIR-GO 16 0.000 2 0.000










fructose degradation (anaerobic) AraCyc 16 0.000 2 0.010










gluconeogenesis AraCyc 16 0.000 2 0.004










glyceraldehyde 3-phosphate degradation AraCyc 16 0.000 2 0.001










glycerol degradation II AraCyc 16 0.000 2 0.004










glycolysis I AraCyc 16 0.000 2 0.064










glycolysis IV AraCyc 16 0.000 2 0.011










sorbitol fermentation AraCyc 16 0.000 2 0.012










triterpene, sterol, and brassinosteroid metabolism LitPath 15 0.000 3 0.007










Phytic acid biosynthesis BioPath 14 0.000 2 0.002










lipases pathway AraCyc 14 0.000 2 0.001










lipid, fatty acid and isoprenoid degradation FunCat 14 0.000 2 0.009










Lipid signaling AcylLipid 14 0.000 2 0.242










Biosynthesis of steroids KEGG 13 0.001 2 0.017










triterpene biosynthesis LitPath 13 0.000 2 0.000










transport FunCat 12 0.000 2 0.000










transport facilitation FunCat 12 0.000 2 0.000










Transcription KEGG 11 0.002 2 0.065



























page created by Juergen Ehlting 07/06/06