Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71B4 (At3g26280) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.































there are no pathways co-expressed in all four data sets




















To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.









































For more information on how these pathway maps were generated please read the methods page


























































































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP71B4 (At3g26280)







max. difference between log2-ratios: 7.3











max. difference between log2-ratios excluding lowest and highest 5%: 6.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






C-compound and carbohydrate metabolism FunCat 69 0.001 13 0.067


Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 58 0.000 8 0.017

biogenesis of chloroplast FunCat 56 0.000 9 0.000

Carbon fixation KEGG 55 0.000 8 0.000

Carotenoid and abscisic acid metabolism LitPath 55 0.000 8 0.000

Intermediary Carbon Metabolism BioPath 54 0.037 9 0.223

Photosystems BioPath 50 0.009 8 0.067

photosynthesis FunCat 45 0.000 7 0.000

Carotenoid biosynthesis BioPath 44 0.000 5 0.000

carotenoid biosynthesis AraCyc 44 0.000 5 0.000

carotenid biosynthesis LitPath 44 0.000 5 0.000

Chloroplastic protein turnover BioPath 40 0.000 7 0.000

Calvin cycle AraCyc 40 0.000 6 0.001

glycolysis and gluconeogenesis FunCat 38 0.001 6 0.109










Biosynthesis of steroids KEGG 36 0.000 5 0.001










Miscellaneous acyl lipid metabolism AcylLipid 36 0.001 7 0.139










ATP-dependent proteolysis TAIR-GO 34 0.000 7 0.000










photorespiration AraCyc 34 0.000 7 0.000










Folding, Sorting and Degradation KEGG 33 0.000 4 0.127










additional photosystem II components BioPath 31 0.000 5 0.010










Leaf Glycerolipid Biosynthesis in Plastid BioPath 28 0.039 3 0.295










jasmonic acid biosynthesis TAIR-GO 28 0.000 4 0.001










photorespiration TAIR-GO 28 0.000 4 0.000










jasmonic acid biosynthesis AraCyc 28 0.000 4 0.001










Glycolysis / Gluconeogenesis KEGG 28 0.000 5 0.012










starch metabolism BioPath 26 0.000 4 0.013










energy FunCat 26 0.000 4 0.000










Pentose phosphate pathway KEGG 26 0.000 4 0.003










Chlorophyll a/b binding proteins BioPath 24 0.000 3 0.011










photosystem I TAIR-GO 24 0.000 3 0.000










glycine biosynthesis I AraCyc 24 0.000 5 0.008










superpathway of serine and glycine biosynthesis II AraCyc 24 0.000 5 0.000










degradation FunCat 21 0.000 4 0.002










protein degradation FunCat 21 0.000 4 0.000










ClpP protease complex BioPath 20 0.000 5 0.000










Pathway for nuclear-encoded, thylakoid-localized proteins BioPath 20 0.000 2 0.022










Transcriptional regulators (chloroplast) BioPath 20 0.000 2 0.000










positive regulation of transcription TAIR-GO 20 0.000 2 0.000










regulation of transcription TAIR-GO 20 0.000 2 0.000










response to ethylene stimulus TAIR-GO 20 0.000 5 0.000










gluconeogenesis AraCyc 20 0.002 3 0.113










Fructose and mannose metabolism KEGG 20 0.000 3 0.027










Protein export KEGG 20 0.000 2 0.034










Pyruvate metabolism KEGG 20 0.006 3 0.103










Thylakoid biogenesis and photosystem assembly BioPath 18 0.000 2 0.003










carotene biosynthesis TAIR-GO 18 0.000 2 0.000










lipid biosynthesis TAIR-GO 18 0.000 2 0.001










glycosylglyceride biosynthesis AraCyc 18 0.000 2 0.002










xanthophyll cycle AraCyc 18 0.000 2 0.000










lipid, fatty acid and isoprenoid biosynthesis FunCat 18 0.020 2 0.278










Synthesis of membrane lipids in plastids AcylLipid 18 0.000 2 0.034












































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP71B4 (At3g26280)







max. difference between log2-ratios: 8.2











max. difference between log2-ratios excluding lowest and highest 5%: 1.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Thylakoid biogenesis and photosystem assembly BioPath 10 0.000 1 0.000
cytochrome b6f complex TAIR-GO 10 0.000 1 0.000
cytochrome b6f complex assembly TAIR-GO 10 0.000 1 0.000
electron transport and membrane-associated energy conservation FunCat 10 0.000 1 0.000










energy FunCat 10 0.000 1 0.000










transport FunCat 10 0.000 1 0.000












































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP71B4 (At3g26280)







max. difference between log2-ratios: 7.4











max. difference between log2-ratios excluding lowest and highest 5%: 2.5











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Biosynthesis of Amino Acids and Derivatives BioPath 46 0.000 6 0.005





Pyruvate metabolism KEGG 28 0.000 4 0.021




Glutathione metabolism BioPath 26 0.000 4 0.002




Intermediary Carbon Metabolism BioPath 24 0.001 3 0.149




response to water deprivation TAIR-GO 24 0.000 3 0.000




Miscellaneous acyl lipid metabolism AcylLipid 24 0.000 4 0.100




beta-Alanine metabolism KEGG 23 0.000 3 0.001




Glutathione metabolism KEGG 22 0.000 3 0.013




Urea cycle and metabolism of amino groups KEGG 22 0.000 3 0.002




Prolin/Hydroxyproline from glutamate BioPath 20 0.000 2 0.000




hyperosmotic salinity response TAIR-GO 20 0.000 2 0.000




proline biosynthesis TAIR-GO 20 0.000 2 0.000




response to abscisic acid stimulus TAIR-GO 20 0.000 2 0.001




amino acid metabolism FunCat 20 0.002 3 0.041










Arginine and proline metabolism KEGG 20 0.000 3 0.013










Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 19 0.002 3 0.022










Basal transcription factors KEGG 19 0.000 3 0.007










Transcription KEGG 19 0.000 3 0.089










Butanoate metabolism KEGG 18 0.000 2 0.017










Glycolysis / Gluconeogenesis KEGG 18 0.015 2 0.241










tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) FunCat 16 0.003 2 0.138










Gluconeogenesis from lipids in seeds BioPath 15 0.000 2 0.059










Nucleotide Metabolism KEGG 15 0.035 2 0.235










Pantothenate and CoA biosynthesis KEGG 15 0.000 2 0.009










Pyrimidine metabolism KEGG 15 0.000 2 0.057










toxin catabolism TAIR-GO 14 0.000 3 0.006










phenylalanine degradation I AraCyc 14 0.000 3 0.003










threonine degradation AraCyc 14 0.000 5 0.000










Carotenoid and abscisic acid metabolism LitPath 14 0.000 2 0.002










carbon monoxide dehydrogenase pathway AraCyc 13 0.000 2 0.023










Degradation of storage lipids and straight fatty acids AcylLipid 13 0.000 3 0.004










aspartate degradation I AraCyc 12 0.000 2 0.019










aspartate degradation II AraCyc 12 0.000 2 0.005










methylglyoxal degradation AraCyc 12 0.000 4 0.000










biosynthesis of phenylpropanoids FunCat 12 0.000 2 0.009










biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine FunCat 12 0.000 2 0.009










Glycerolipid metabolism KEGG 12 0.005 2 0.035










Tyrosine metabolism KEGG 12 0.007 2 0.057










Biosynthesis of prenyl diphosphates BioPath 11 0.004 2 0.019










core phenylpropanoid metabolism BioPath 10 0.005 1 0.118










acyl-CoA binding TAIR-GO 10 0.000 1 0.000










lignin biosynthesis TAIR-GO 10 0.000 1 0.009










lipid transport TAIR-GO 10 0.000 1 0.005










response to dessication TAIR-GO 10 0.000 1 0.002










lignin biosynthesis AraCyc 10 0.020 1 0.253










biogenesis of chloroplast FunCat 10 0.037 2 0.042










cellular sensing and response FunCat 10 0.000 1 0.000










chemoperception and response FunCat 10 0.000 1 0.000










osmosensing FunCat 10 0.000 1 0.000










Cysteine metabolism KEGG 10 0.007 2 0.021





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP71B4 (At3g26280)







max. difference between log2-ratios: 7.9











max. difference between log2-ratios excluding lowest and highest 5%: 4.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






C-compound and carbohydrate metabolism FunCat 46 0.000 6 0.144



glycolysis and gluconeogenesis FunCat 46 0.000 6 0.003


Intermediary Carbon Metabolism BioPath 42 0.000 5 0.047


Photosystems BioPath 40 0.000 5 0.008


Biosynthesis of Amino Acids and Derivatives BioPath 36 0.000 5 0.059


Glycolysis / Gluconeogenesis KEGG 26 0.000 3 0.008


additional photosystem II components BioPath 24 0.000 3 0.004


Translation factors KEGG 20.5 0.000 4 0.002


photosynthesis FunCat 20 0.000 3 0.006


protein synthesis FunCat 20 0.039 3 0.154


Pyruvate metabolism KEGG 20 0.000 2 0.039


Valine, leucine and isoleucine biosynthesis KEGG 20 0.000 2 0.004


Gluconeogenesis from lipids in seeds BioPath 18 0.000 3 0.027










isoprenoid biosynthesis FunCat 18 0.000 3 0.018










lipid, fatty acid and isoprenoid biosynthesis FunCat 18 0.000 3 0.011










ATP synthase components BioPath 16 0.000 2 0.001










Glutathione metabolism BioPath 16 0.005 3 0.028










ATP synthesis coupled proton transport TAIR-GO 16 0.000 2 0.000










photosystem I TAIR-GO 16 0.000 2 0.001










photosystem II TAIR-GO 16 0.000 2 0.000










proton transport TAIR-GO 16 0.000 2 0.000










response to heat TAIR-GO 16 0.000 2 0.003










acetate fermentation AraCyc 16 0.000 2 0.038










Calvin cycle AraCyc 16 0.000 2 0.008










fructose degradation (anaerobic) AraCyc 16 0.000 2 0.031










gluconeogenesis AraCyc 16 0.000 2 0.013










glyceraldehyde 3-phosphate degradation AraCyc 16 0.000 2 0.002










glycerol degradation II AraCyc 16 0.000 2 0.013










glycolysis I AraCyc 16 0.002 2 0.166










glycolysis IV AraCyc 16 0.000 2 0.033










sorbitol fermentation AraCyc 16 0.000 2 0.035










transport FunCat 16 0.000 2 0.000










transport facilitation FunCat 16 0.000 2 0.000










Carbon fixation KEGG 16 0.000 2 0.030










Translation (chloroplast) BioPath 14 0.000 2 0.000










methionine degradation I AraCyc 14 0.000 2 0.000










translation FunCat 14 0.000 2 0.004










Selenoamino acid metabolism KEGG 14 0.000 2 0.004










Glutathione metabolism KEGG 12 0.000 2 0.009










Branched-chain amino acids from aspartate BioPath 10 0.000 1 0.066










core phenylpropanoid metabolism BioPath 10 0.032 1 0.177










Cytochrome b6/f complex BioPath 10 0.000 1 0.009










Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 10 0.002 1 0.091










cytochrome b6f complex TAIR-GO 10 0.000 1 0.009










electron transport TAIR-GO 10 0.001 1 0.093










glucosinolate biosynthesis TAIR-GO 10 0.000 1 0.017










glycolysis TAIR-GO 10 0.000 1 0.001










hypersensitive response TAIR-GO 10 0.000 1 0.009










methylation-dependent chromatin silencing TAIR-GO 10 0.000 1 0.000










nonphotochemical quenching TAIR-GO 10 0.000 1 0.001



























page created by Vincent Sauveplane 04/28/06