Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71B5 (At3g53280) save all data as Tab Delimited Table










_________________________________________















Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.































there are no pathways co-expressed in all four data sets




















To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.









































For more information on how these pathway maps were generated please read the methods page









































































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP71B5 (At3g53280)







max. difference between log2-ratios: 6.1











max. difference between log2-ratios excluding lowest and highest 5%: 4.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Phenylpropanoid Metabolism BioPath 21 0.000 3 0.010


biogenesis of chloroplast FunCat 18 0.000 3 0.000

Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 10 0.000 1 0.033

Glucosyltransferases for benzoic acids BioPath 10 0.000 1 0.002

aromatic amino acid family biosynthesis TAIR-GO 10 0.000 1 0.001

aromatic amino acid family biosynthesis, shikimate pathway TAIR-GO 10 0.000 1 0.001

amino acid metabolism FunCat 10 0.000 1 0.096

Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 10 0.000 1 0.026










chorismate biosynthesis LitPath 10 0.000 1 0.004










Shikimate pathway LitPath 10 0.000 1 0.030










C-compound and carbohydrate metabolism FunCat 9 0.042 3 0.040










ascorbic acid biosynthesis BioPath 8 0.000 1 0.005










Chloroplastic protein turnover BioPath 8 0.000 2 0.000










ClpP protease complex BioPath 8 0.000 2 0.000










ATP-dependent proteolysis TAIR-GO 8 0.000 2 0.000










degradation FunCat 8 0.000 2 0.000










protein degradation FunCat 8 0.000 2 0.000










Methane metabolism KEGG 8 0.000 2 0.011












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP71B5 (At3g53280)







max. difference between log2-ratios: 1.2











max. difference between log2-ratios excluding lowest and highest 5%: 0.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






nucleotide metabolism FunCat 16 0.000 4 0.000
(deoxy)ribose phosphate degradation AraCyc 14 0.000 3 0.000
pyrimidine nucleotide metabolism FunCat 14 0.000 3 0.000
Nucleotide Metabolism KEGG 14 0.000 3 0.001
Pyrimidine metabolism KEGG 14 0.000 3 0.000
secondary metabolism FunCat 11 0.000 2 0.013
Cell Wall Carbohydrate Metabolism BioPath 10 0.000 4 0.023
gibberellic acid biosynthesis TAIR-GO 10 0.000 1 0.000










gibberellin biosynthesis AraCyc 10 0.000 1 0.000










plant / fungal specific systemic sensing and response FunCat 10 0.000 1 0.010










plant hormonal regulation FunCat 10 0.000 1 0.010










Diterpenoid biosynthesis KEGG 10 0.000 1 0.003










Gibberellin metabolism LitPath 10 0.000 1 0.028










giberelin biosynthesis LitPath 10 0.000 1 0.017










Intermediary Carbon Metabolism BioPath 8 0.000 2 0.046










iron-sulfur cluster assembly TAIR-GO 7 0.000 1 0.000










Nitrogen metabolism KEGG 7 0.000 1 0.017










Carotenoid and abscisic acid metabolism LitPath 7 0.000 2 0.004












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP71B5 (At3g53280)







max. difference between log2-ratios: 1.9











max. difference between log2-ratios excluding lowest and highest 5%: 0.5











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Cell Wall Carbohydrate Metabolism BioPath 91 0.000 22 0.000





pectin metabolism BioPath 69 0.000 18 0.000




mono-/sesqui-/di-terpene biosynthesis LitPath 54 0.000 6 0.000




terpenoid metabolism LitPath 54 0.000 6 0.000




Miscellaneous acyl lipid metabolism AcylLipid 44 0.000 16 0.000




Starch and sucrose metabolism KEGG 42 0.000 6 0.000




sexual reproduction TAIR-GO 20 0.000 5 0.000




monoterpene biosynthesis LitPath 20 0.000 2 0.000




sucrose metabolism BioPath 16 0.000 2 0.004




Galactose metabolism KEGG 16 0.000 2 0.003




biogenesis of cell wall FunCat 14 0.000 6 0.000




C-compound and carbohydrate utilization FunCat 14 0.000 2 0.000




jasmonic acid biosynthesis TAIR-GO 10 0.000 1 0.017




jasmonic acid mediated signaling pathway TAIR-GO 10 0.000 1 0.000










jasmonic acid metabolism TAIR-GO 10 0.000 1 0.000










monoterpenoid biosynthesis TAIR-GO 10 0.000 1 0.001










N-terminal protein myristoylation TAIR-GO 10 0.000 1 0.006










pentacyclic triterpenoid biosynthesis TAIR-GO 10 0.000 1 0.003










response to wounding TAIR-GO 10 0.000 1 0.022










jasmonic acid biosynthesis AraCyc 10 0.000 1 0.001










monoterpene biosynthesis AraCyc 10 0.000 1 0.000










plant monoterpene biosynthesis AraCyc 10 0.000 1 0.000










C-compound, carbohydrate catabolism FunCat 10 0.000 3 0.002










Biosynthesis of steroids KEGG 10 0.000 1 0.067










sequiterpene biosynthesis LitPath 10 0.000 1 0.001










triterpene biosynthesis LitPath 10 0.000 1 0.032










cellulose biosynthesis AraCyc 8 0.000 2 0.000










lactose degradation IV AraCyc 8 0.000 2 0.000










Oxidative phosphorylation KEGG 8 0.000 2 0.029










Pentose and glucuronate interconversions KEGG 8 0.000 2 0.000





























































Pathways co-expressed in the Mutant data set (with more than 8 annotation points)
CYP71B5 (At3g53280)







max. difference between log2-ratios: 8.8











max. difference between log2-ratios excluding lowest and highest 5%: 2.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Lipid signaling AcylLipid 21 0.000 7 0.001



Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 19 0.001 3 0.035


indoleacetic acid biosynthesis TAIR-GO 18 0.000 2 0.000


IAA biosynthesis AraCyc 18 0.000 2 0.002


IAA biosynthesis I AraCyc 18 0.000 2 0.001


plant / fungal specific systemic sensing and response FunCat 18 0.000 2 0.003


plant hormonal regulation FunCat 18 0.000 2 0.003


Gluconeogenesis from lipids in seeds BioPath 17 0.000 3 0.018


acetyl-CoA assimilation AraCyc 16 0.000 2 0.035


glyoxylate cycle AraCyc 16 0.000 2 0.015


serine-isocitrate lyase pathway AraCyc 16 0.000 2 0.082


TCA cycle -- aerobic respiration AraCyc 16 0.000 2 0.091


TCA cycle variation VII AraCyc 16 0.010 2 0.213


TCA cycle variation VIII AraCyc 16 0.000 2 0.100










Citrate cycle (TCA cycle) KEGG 16 0.000 2 0.035










Glyoxylate and dicarboxylate metabolism KEGG 16 0.000 2 0.013










Reductive carboxylate cycle (CO2 fixation) KEGG 16 0.000 2 0.005










Carbon fixation KEGG 15 0.000 2 0.107










ATP-dependent proteolysis TAIR-GO 14 0.000 2 0.002










development TAIR-GO 13 0.000 2 0.045










glycine biosynthesis I AraCyc 13 0.000 3 0.016










photorespiration AraCyc 13 0.000 3 0.007










superpathway of serine and glycine biosynthesis II AraCyc 13 0.000 3 0.001










Ascorbate and aldarate metabolism KEGG 13 0.000 3 0.001










Benzoate degradation via CoA ligation KEGG 13 0.003 3 0.072










Fluorene degradation KEGG 13 0.000 3 0.000










gamma-Hexachlorocyclohexane degradation KEGG 13 0.000 3 0.000










Stilbene, coumarine and lignin biosynthesis KEGG 13 0.002 3 0.097










Tryptophan metabolism KEGG 13 0.000 2 0.022










response to ethylene stimulus TAIR-GO 12 0.000 3 0.000










leucine biosynthesis AraCyc 12 0.000 2 0.005










isoleucine degradation I AraCyc 11 0.000 2 0.016










isoleucine degradation III AraCyc 11 0.000 2 0.002










leucine degradation I AraCyc 11 0.000 2 0.016










leucine degradation II AraCyc 11 0.000 2 0.002










valine degradation I AraCyc 11 0.000 2 0.041










valine degradation II AraCyc 11 0.000 2 0.006










Glycan Biosynthesis and Metabolism KEGG 11 0.006 2 0.100










Nitrogen metabolism KEGG 11 0.001 2 0.018










Degradation of storage lipids and straight fatty acids AcylLipid 11 0.000 2 0.044










triterpene, sterol, and brassinosteroid metabolism LitPath 11 0.035 2 0.258










brassinosteroid biosynthesis BioPath 10 0.000 1 0.001










Chlorophyll biosynthesis and breakdown BioPath 10 0.002 1 0.087










Chloroplastic protein turnover BioPath 10 0.000 1 0.013










ERD1 protease (ClpC-like) BioPath 10 0.000 1 0.000










Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 10 0.000 1 0.074










brassinosteroid biosynthesis TAIR-GO 10 0.000 1 0.028










chlorophyll catabolism TAIR-GO 10 0.000 1 0.001










growth TAIR-GO 10 0.000 1 0.099










hypersensitive response TAIR-GO 10 0.000 1 0.007



























page created by Vincent Sauveplane 04/28/06