Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71B6 (At2g24180) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.







Pathway Source Sum of scores Sum of genes







tryptophan biosynthesis TAIR-GO 372 48







Glutathione metabolism BioPath 236 35







Glutathione metabolism KEGG 228 35







response to pathogenic bacteria TAIR-GO 131 19
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.








toxin catabolism TAIR-GO 99 22




























For more information on how these pathway maps were generated please read the methods page









































































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP71B6 (At2g24180)







max. difference between log2-ratios: 5.1











max. difference between log2-ratios excluding lowest and highest 5%: 3.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Biosynthesis of Amino Acids and Derivatives BioPath 44 0.000 6 0.000


Glutathione metabolism BioPath 34 0.000 5 0.000

indoleacetic acid biosynthesis TAIR-GO 28 0.000 3 0.000

IAA biosynthesis AraCyc 28 0.000 3 0.000

IAA biosynthesis I AraCyc 28 0.000 3 0.000

toxin catabolism TAIR-GO 26 0.000 5 0.000

Glutathione metabolism KEGG 26 0.000 5 0.000

glucosinolate biosynthesis from tryptophan AraCyc 20 0.000 2 0.000

Glucosinolate Metabolism LitPath 20 0.000 2 0.000

plant / fungal specific systemic sensing and response FunCat 18 0.000 2 0.000










plant hormonal regulation FunCat 18 0.000 2 0.000










Benzoate degradation via CoA ligation KEGG 13 0.000 3 0.007










Stilbene, coumarine and lignin biosynthesis KEGG 12 0.000 2 0.054










Glucosyltransferases for benzoic acids BioPath 10 0.000 1 0.003










Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 10 0.000 1 0.017










sucrose metabolism BioPath 10 0.000 1 0.007










cellular response to sulfate starvation TAIR-GO 10 0.000 1 0.000










glucosinolate biosynthesis TAIR-GO 10 0.000 1 0.004










indole glucosinolate biosynthesis TAIR-GO 10 0.000 1 0.000










response to red light TAIR-GO 10 0.000 1 0.000










response to stress TAIR-GO 10 0.000 1 0.001










shade avoidance TAIR-GO 10 0.000 1 0.000










tryptophan biosynthesis TAIR-GO 10 0.000 1 0.016










tryptophan catabolism TAIR-GO 10 0.000 1 0.000










cysteine biosynthesis I AraCyc 10 0.000 1 0.012










glucosinolate biosynthesis from phenylalanine AraCyc 10 0.000 1 0.000










sulfate assimilation III AraCyc 10 0.000 1 0.008










biosynthesis of phenylpropanoids FunCat 10 0.000 1 0.021










biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine FunCat 10 0.000 1 0.021










glycolysis and gluconeogenesis FunCat 10 0.026 1 0.185










nitrogen and sulfur metabolism FunCat 10 0.000 1 0.008










Ascorbate and aldarate metabolism KEGG 10 0.000 1 0.020










Cysteine metabolism KEGG 10 0.000 1 0.023










Fluorene degradation KEGG 10 0.000 1 0.007










Galactose metabolism KEGG 10 0.000 1 0.029










gamma-Hexachlorocyclohexane degradation KEGG 10 0.000 1 0.009










Starch and sucrose metabolism KEGG 10 0.003 1 0.139










Sulfur metabolism KEGG 10 0.000 1 0.015










Tryptophan metabolism KEGG 10 0.000 2 0.003










Lipid signaling AcylLipid 10 0.000 2 0.000










Phenylpropanoid pathway LitPath 10 0.000 1 0.037










response to pathogenic bacteria TAIR-GO 9 0.000 1 0.001










Cyanoamino acid metabolism KEGG 9 0.000 1 0.020










Nitrogen metabolism KEGG 9 0.000 1 0.031










Phytic acid biosynthesis BioPath 8 0.000 1 0.010










abscisic acid mediated signaling TAIR-GO 8 0.000 1 0.001










response to cold TAIR-GO 8 0.000 1 0.003










response to salt stress TAIR-GO 8 0.000 1 0.001










response to water deprivation TAIR-GO 8 0.000 1 0.000










lipases pathway AraCyc 8 0.000 1 0.005










degradation FunCat 8 0.000 1 0.013












































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP71B6 (At2g24180)







max. difference between log2-ratios: 4.8











max. difference between log2-ratios excluding lowest and highest 5%: 2.5











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Phenylpropanoid Metabolism BioPath 140 0.000 21 0.000
Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 106 0.000 15 0.000
Shikimate pathway LitPath 104 0.000 14 0.000
tryptophan biosynthesis TAIR-GO 88 0.000 11 0.000
Trp biosyntesis LitPath 88 0.000 11 0.000
tryptophan biosynthesis AraCyc 78 0.000 10 0.000
Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 76 0.000 10 0.000
response to pathogenic bacteria TAIR-GO 54 0.000 8 0.000
Biosynthesis of Amino Acids and Derivatives BioPath 52 0.000 8 0.048
amino acid metabolism FunCat 50 0.000 8 0.000
Gluconeogenesis from lipids in seeds BioPath 49 0.000 6 0.003
Stilbene, coumarine and lignin biosynthesis KEGG 49 0.000 10 0.000
Glutathione metabolism BioPath 40 0.000 6 0.003
Fatty acid metabolism KEGG 38 0.000 4 0.003










Degradation of storage lipids and straight fatty acids AcylLipid 37 0.000 4 0.002










Intermediary Carbon Metabolism BioPath 34 0.045 8 0.036










toxin catabolism TAIR-GO 32 0.000 8 0.000










lignin biosynthesis AraCyc 28 0.000 4 0.002










Pyruvate metabolism KEGG 28 0.001 5 0.021










Glycolysis / Gluconeogenesis KEGG 26 0.002 4 0.083










Ascorbate and aldarate metabolism KEGG 25 0.000 3 0.006










Arginine and proline metabolism KEGG 24 0.000 3 0.037










Glutathione metabolism KEGG 24 0.000 4 0.008










core phenylpropanoid metabolism BioPath 22 0.000 3 0.040










cysteine biosynthesis I AraCyc 22 0.000 4 0.001










lipid, fatty acid and isoprenoid degradation FunCat 22 0.000 3 0.001










response to wounding TAIR-GO 20 0.000 2 0.025










Cysteine metabolism KEGG 20 0.000 2 0.047










Phenylalanine metabolism KEGG 20 0.003 6 0.016










Glucosinolate Metabolism LitPath 20 0.003 2 0.079










fatty acid beta oxidation complex BioPath 19 0.000 3 0.003










IAA biosynthesis AraCyc 19 0.000 2 0.002










sulfate assimilation III AraCyc 18 0.000 3 0.005










nitrogen and sulfur metabolism FunCat 18 0.000 3 0.000










Glycine, serine and threonine metabolism KEGG 18 0.000 3 0.022










Pyrimidine metabolism KEGG 18 0.000 2 0.120










beta-Alanine metabolism KEGG 17 0.000 2 0.021










Fluorene degradation KEGG 17 0.000 2 0.009










gamma-Hexachlorocyclohexane degradation KEGG 17 0.000 2 0.014










defense response TAIR-GO 16 0.000 2 0.020










metabolism of the cysteine - aromatic group FunCat 16 0.000 2 0.001










Flavonoid and anthocyanin metabolism BioPath 12 0.011 3 0.073










aromatic amino acid family biosynthesis TAIR-GO 12 0.000 2 0.007










aromatic amino acid family biosynthesis, shikimate pathway TAIR-GO 12 0.000 2 0.004










Propanoate metabolism KEGG 12 0.006 2 0.061










chorismate biosynthesis LitPath 12 0.003 2 0.036










Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 10 0.042 1 0.216










anthranilate synthase complex TAIR-GO 10 0.000 1 0.001










cellular response to sulfate starvation TAIR-GO 10 0.000 1 0.001










fatty acid metabolism TAIR-GO 10 0.027 1 0.167












































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP71B6 (At2g24180)







max. difference between log2-ratios: 3.2











max. difference between log2-ratios excluding lowest and highest 5%: 0.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Phenylpropanoid Metabolism BioPath 87 0.000 13 0.000





tryptophan biosynthesis TAIR-GO 68 0.000 9 0.000




Shikimate pathway LitPath 68 0.000 9 0.000




Trp biosyntesis LitPath 68 0.000 9 0.000




Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 64 0.000 9 0.000




tryptophan biosynthesis AraCyc 58 0.000 8 0.000




response to pathogenic bacteria TAIR-GO 54 0.000 8 0.000




Intermediary Carbon Metabolism BioPath 36 0.000 6 0.021




Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 34 0.000 5 0.000




Glutathione metabolism BioPath 28 0.000 4 0.007




Fatty acid metabolism KEGG 28 0.000 3 0.002




Glutathione metabolism KEGG 28 0.000 5 0.000




C-compound and carbohydrate metabolism FunCat 27 0.000 8 0.002




toxin catabolism TAIR-GO 26 0.000 5 0.000










Gluconeogenesis from lipids in seeds BioPath 24 0.000 3 0.033










lipid, fatty acid and isoprenoid degradation FunCat 22 0.000 3 0.000










Pyruvate metabolism KEGG 22 0.000 3 0.024










Stilbene, coumarine and lignin biosynthesis KEGG 21 0.000 4 0.017










Degradation of storage lipids and straight fatty acids AcylLipid 20 0.000 2 0.002










IAA biosynthesis AraCyc 18 0.000 2 0.000










Glycolysis / Gluconeogenesis KEGG 18 0.001 2 0.114










Tryptophan metabolism KEGG 17 0.000 2 0.015










4-hydroxyproline degradation AraCyc 16 0.000 2 0.000










arginine degradation IX AraCyc 16 0.000 2 0.000










lignin biosynthesis AraCyc 16 0.000 2 0.018










proline degradation I AraCyc 16 0.000 2 0.003










proline degradation II AraCyc 16 0.000 2 0.000










amino acid metabolism FunCat 16 0.001 3 0.027










cysteine biosynthesis I AraCyc 15 0.000 3 0.001










Ascorbate and aldarate metabolism KEGG 15 0.000 2 0.006










Arginine and proline metabolism KEGG 14 0.000 2 0.026










Citrate cycle (TCA cycle) KEGG 14 0.000 2 0.025










Glycine, serine and threonine metabolism KEGG 14 0.000 2 0.017










core phenylpropanoid metabolism BioPath 12 0.008 2 0.046










Cyanoamino acid metabolism KEGG 11 0.000 2 0.006










Chloroplastic protein turnover BioPath 10 0.000 1 0.019










ERD1 protease (ClpC-like) BioPath 10 0.000 1 0.000










fatty acid beta oxidation complex BioPath 10 0.000 1 0.059










salycilic acid biosynthesis BioPath 10 0.000 1 0.002










anthranilate synthase complex TAIR-GO 10 0.000 1 0.000










ATP-dependent proteolysis TAIR-GO 10 0.000 1 0.021










fatty acid metabolism TAIR-GO 10 0.002 1 0.094










lignin biosynthesis TAIR-GO 10 0.000 1 0.014










long-chain fatty acid metabolism TAIR-GO 10 0.000 1 0.047










response to stress TAIR-GO 10 0.000 1 0.002










response to wounding TAIR-GO 10 0.001 1 0.076










metabolism of the cysteine - aromatic group FunCat 10 0.000 1 0.005










stress response FunCat 10 0.000 1 0.000










metabolism of acyl-lipids in mitochondria AcylLipid 10 0.000 1 0.012










auxin biosynthesis TAIR-GO 9 0.000 1 0.002





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP71B6 (At2g24180)







max. difference between log2-ratios: 3.9











max. difference between log2-ratios excluding lowest and highest 5%: 1.3











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Biosynthesis of Amino Acids and Derivatives BioPath 54 0.000 7 0.019



Glutathione metabolism BioPath 44 0.000 6 0.000


Phenylpropanoid Metabolism BioPath 43 0.000 7 0.023


Intermediary Carbon Metabolism BioPath 42 0.000 8 0.004


Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 40 0.000 5 0.001


tryptophan biosynthesis TAIR-GO 40 0.000 5 0.000


Shikimate pathway LitPath 40 0.000 5 0.001


Trp biosyntesis LitPath 40 0.000 5 0.000


Glutathione metabolism KEGG 38 0.000 5 0.001


Glutamate metabolism KEGG 36 0.000 5 0.001


TCA cycle -- aerobic respiration AraCyc 34 0.000 6 0.000


tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) FunCat 34 0.000 6 0.015


Citrate cycle (TCA cycle) KEGG 34 0.000 6 0.000


acetyl-CoA assimilation AraCyc 30 0.000 5 0.000










TCA cycle variation VII AraCyc 30 0.000 5 0.011










TCA cycle variation VIII AraCyc 30 0.000 5 0.002










tryptophan biosynthesis AraCyc 30 0.000 4 0.001










amino acid metabolism FunCat 30 0.002 4 0.128










Gluconeogenesis from lipids in seeds BioPath 28 0.000 5 0.002










glyoxylate cycle AraCyc 26 0.000 4 0.000










serine-isocitrate lyase pathway AraCyc 26 0.000 4 0.007










Glyoxylate and dicarboxylate metabolism KEGG 26 0.000 4 0.001










Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 26 0.000 3 0.023










Reductive carboxylate cycle (CO2 fixation) KEGG 26 0.000 4 0.000










Carbon fixation KEGG 22 0.000 4 0.024










glutathione biosynthesis TAIR-GO 20 0.000 2 0.000










glutathione biosynthesis AraCyc 20 0.000 2 0.000










leucine biosynthesis AraCyc 20 0.000 3 0.001










C-compound and carbohydrate glyoxylate cycle FunCat 20 0.000 3 0.000










glyoxylate cycle FunCat 20 0.000 3 0.000










transport FunCat 20 0.000 4 0.000










Miscellaneous acyl lipid metabolism AcylLipid 20 0.000 2 0.061










mixed acid fermentation AraCyc 18 0.000 4 0.002










development TAIR-GO 16 0.000 2 0.045










Oxidative phosphorylation KEGG 16 0.000 4 0.037










growth TAIR-GO 15 0.000 2 0.015










toxin catabolism TAIR-GO 15 0.000 4 0.003










response to pathogenic bacteria TAIR-GO 14 0.000 2 0.000










Translation factors KEGG 14 0.011 4 0.066










electron transport TAIR-GO 12 0.000 3 0.001










aspartate degradation I AraCyc 12 0.001 2 0.032










aspartate degradation II AraCyc 12 0.000 2 0.008










lignin biosynthesis AraCyc 12 0.028 4 0.006










tRNA charging pathway AraCyc 12 0.000 5 0.001










transport facilitation FunCat 12 0.000 2 0.000










Alanine and aspartate metabolism KEGG 12 0.000 2 0.043










Aminoacyl-tRNA biosynthesis KEGG 12 0.000 5 0.001










Chlorophyll biosynthesis and breakdown BioPath 10 0.025 1 0.148










Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 10 0.002 1 0.127










cell death TAIR-GO 10 0.000 1 0.003



























page created by Vincent Sauveplane 05/02/06