Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP71B7 (At1g13110) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.



















There are no pathways co-expressed in all four datasets
































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.









































For more information on how these pathway maps were generated please read the methods page









































































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP71B7 (At1g13110)







max. difference between log2-ratios: 6.6











max. difference between log2-ratios excluding lowest and highest 5%: 5.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Glucosinolate Metabolism LitPath 130 0.000 13 0.000


Biosynthesis of Amino Acids and Derivatives BioPath 118 0.000 16 0.000

Glutathione metabolism BioPath 70 0.000 10 0.000

Phenylpropanoid Metabolism BioPath 52 0.000 6 0.103

glucosinolate biosynthesis TAIR-GO 50 0.000 5 0.000

sulfate assimilation III AraCyc 46 0.000 6 0.000

amino acid metabolism FunCat 44 0.000 6 0.001

Selenoamino acid metabolism KEGG 40 0.000 5 0.000

Sulfur metabolism KEGG 40 0.000 5 0.000

Lipid signaling AcylLipid 40 0.000 8 0.007

Stilbene, coumarine and lignin biosynthesis KEGG 39 0.000 4 0.056

gamma-Hexachlorocyclohexane degradation KEGG 33 0.000 4 0.000

Flavonoid and anthocyanin metabolism BioPath 30 0.000 3 0.038

cysteine biosynthesis I AraCyc 30 0.000 4 0.004










glucosinolate biosynthesis from homomethionine AraCyc 30 0.000 3 0.000










glucosinolate biosynthesis from phenylalanine AraCyc 30 0.000 3 0.000










glucosinolate biosynthesis from tryptophan AraCyc 30 0.000 3 0.000










Ascorbate and aldarate metabolism KEGG 29 0.000 3 0.002










Fluorene degradation KEGG 29 0.000 3 0.000










Branched-chain amino acids from aspartate BioPath 28 0.000 4 0.000










leucine biosynthesis AraCyc 28 0.000 4 0.000










Glutamate metabolism KEGG 28 0.000 3 0.012










Miscellaneous acyl lipid metabolism AcylLipid 26 0.008 6 0.108










Pyruvate metabolism KEGG 24 0.001 3 0.064










Valine, leucine and isoleucine biosynthesis KEGG 24 0.000 3 0.004










jasmonic acid biosynthesis TAIR-GO 22 0.000 3 0.002










jasmonic acid biosynthesis AraCyc 22 0.000 3 0.001










Glycan Biosynthesis and Metabolism KEGG 22 0.000 3 0.043










indoleacetic acid biosynthesis TAIR-GO 20 0.000 2 0.000










tryptophan biosynthesis TAIR-GO 20 0.000 2 0.014










tryptophan catabolism TAIR-GO 20 0.000 2 0.000










IAA biosynthesis AraCyc 20 0.000 2 0.004










IAA biosynthesis I AraCyc 20 0.000 2 0.002










nitrogen and sulfur metabolism FunCat 20 0.000 2 0.004










Cysteine metabolism KEGG 20 0.000 3 0.002










Glycerolipid metabolism KEGG 20 0.000 3 0.005










Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 20 0.000 2 0.061










Purine metabolism KEGG 20 0.001 2 0.132










alanine biosynthesis II AraCyc 19 0.000 2 0.032










response to water deprivation TAIR-GO 18 0.000 2 0.000










C-compound and carbohydrate utilization FunCat 18 0.000 3 0.000










Alanine and aspartate metabolism KEGG 18 0.000 2 0.026










toxin catabolism TAIR-GO 16 0.000 4 0.011










dissimilatory sulfate reduction AraCyc 16 0.000 2 0.001










lipoxygenase pathway AraCyc 16 0.000 2 0.004










nitrogen and sulfur utilization FunCat 16 0.000 2 0.001










Ion channels KEGG 16 0.000 5 0.000










Ligand-Receptor Interaction KEGG 16 0.000 5 0.001










Nitrogen metabolism KEGG 16 0.002 2 0.029










cellulose biosynthesis BioPath 14 0.006 2 0.086










Fructose and mannose metabolism KEGG 14 0.018 2 0.072












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP71B7 (At1g13110)







max. difference between log2-ratios: 9.1











max. difference between log2-ratios excluding lowest and highest 5%: 2.1











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Stilbene, coumarine and lignin biosynthesis KEGG 26 0.000 5 0.000
core phenylpropanoid metabolism BioPath 20 0.000 2 0.001
Phenylpropanoid Metabolism BioPath 20 0.000 2 0.030
lignin biosynthesis TAIR-GO 20 0.000 2 0.000
phenylpropanoid biosynthesis TAIR-GO 20 0.000 2 0.000
lignin biosynthesis AraCyc 20 0.000 2 0.003
Ascorbate and aldarate metabolism KEGG 20 0.000 2 0.001










Fluorene degradation KEGG 20 0.000 2 0.000










gamma-Hexachlorocyclohexane degradation KEGG 20 0.000 2 0.000










Phenylpropanoid pathway LitPath 20 0.000 2 0.000










Biosynthesis of Amino Acids and Derivatives BioPath 16 0.000 2 0.027










Miscellaneous acyl lipid metabolism AcylLipid 14 0.000 3 0.005










biogenesis of cell wall FunCat 12 0.000 2 0.002










Glutamate/glutamine from nitrogen fixation BioPath 10 0.000 1 0.001










fatty acid biosynthesis TAIR-GO 10 0.000 1 0.005










ammonia assimilation cycle AraCyc 10 0.000 1 0.002










fatty acid oxidation pathway AraCyc 10 0.000 1 0.008










glutamine biosynthesis I AraCyc 10 0.000 1 0.001










nitrate assimilation pathway AraCyc 10 0.000 1 0.002










octane oxidation AraCyc 10 0.000 1 0.002










phenylpropanoid biosynthesis AraCyc 10 0.000 1 0.001










suberin biosynthesis AraCyc 10 0.000 1 0.007










amino acid metabolism FunCat 10 0.001 1 0.058










assimilation of ammonia, metabolism of the glutamate group FunCat 10 0.000 1 0.003










biosynthesis of phenylpropanoids FunCat 10 0.000 1 0.007










biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine FunCat 10 0.000 1 0.007










nitrogen and sulfur metabolism FunCat 10 0.000 1 0.002










Fatty acid metabolism KEGG 10 0.000 1 0.023










auxin mediated signaling pathway TAIR-GO 9 0.000 1 0.000










Mo-molybdopterin cofactor biosynthesis TAIR-GO 9 0.000 1 0.000










molybdenum ion binding TAIR-GO 9 0.000 1 0.000










phosphorylation TAIR-GO 9 0.000 1 0.000










protein amino acid phosphorylation TAIR-GO 9 0.000 1 0.001










asparagine degradation I AraCyc 9 0.000 1 0.005










gluconeogenesis AraCyc 9 0.000 1 0.039










phenylalanine degradation I AraCyc 9 0.000 1 0.015










TCA cycle variation IV AraCyc 9 0.000 1 0.039










TCA cycle variation VII AraCyc 9 0.002 1 0.086










biosynthesis of vitamins, cofactors, and prosthetic groups FunCat 9 0.000 1 0.001










Folate biosynthesis KEGG 9 0.000 1 0.005










Gluconeogenesis from lipids in seeds BioPath 8 0.000 1 0.031










defense response TAIR-GO 8 0.000 1 0.010










defense response to bacteria TAIR-GO 8 0.000 1 0.000










response to bacteria TAIR-GO 8 0.000 1 0.000










glycerol degradation II AraCyc 8 0.000 1 0.039










glycerol metabolism AraCyc 8 0.000 1 0.005










Glycerolipid metabolism KEGG 8 0.000 1 0.021












































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP71B7 (At1g13110)







max. difference between log2-ratios: 2.9











max. difference between log2-ratios excluding lowest and highest 5%: 1.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Intermediary Carbon Metabolism BioPath 10 0.000 1 0.000





acetyl-CoA assimilation AraCyc 10 0.000 1 0.001










glyoxylate cycle AraCyc 10 0.000 1 0.001










leucine biosynthesis AraCyc 10 0.000 1 0.000










serine-isocitrate lyase pathway AraCyc 10 0.000 1 0.003










TCA cycle -- aerobic respiration AraCyc 10 0.000 1 0.003










TCA cycle variation VII AraCyc 10 0.000 1 0.006










TCA cycle variation VIII AraCyc 10 0.000 1 0.003










C-compound and carbohydrate glyoxylate cycle FunCat 10 0.000 1 0.000










glyoxylate cycle FunCat 10 0.000 1 0.000










tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) FunCat 10 0.000 1 0.003










Citrate cycle (TCA cycle) KEGG 10 0.000 1 0.000










Glyoxylate and dicarboxylate metabolism KEGG 10 0.000 1 0.000










Reductive carboxylate cycle (CO2 fixation) KEGG 10 0.000 1 0.000





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP71B7 (At1g13110)







max. difference between log2-ratios: 9.0











max. difference between log2-ratios excluding lowest and highest 5%: 1.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






C-compound and carbohydrate metabolism FunCat 189 0.000 35 0.020



Intermediary Carbon Metabolism BioPath 160 0.000 28 0.002


Photosystems BioPath 150 0.000 19 0.007


biogenesis of chloroplast FunCat 116 0.000 15 0.000


Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 113 0.000 15 0.013


glycolysis and gluconeogenesis FunCat 108 0.000 18 0.017


Carbon fixation KEGG 101 0.000 17 0.000


transport FunCat 99 0.000 16 0.000


photosynthesis FunCat 94 0.000 14 0.000


Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 82 0.001 9 0.130


Chlorophyll a/b binding proteins BioPath 72 0.000 9 0.000


Glycolysis / Gluconeogenesis KEGG 72 0.000 13 0.007


Glutathione metabolism BioPath 66 0.029 9 0.198


Biosynthesis of steroids KEGG 65 0.000 7 0.046










triterpene, sterol, and brassinosteroid metabolism LitPath 63 0.031 8 0.374










Calvin cycle AraCyc 62 0.000 11 0.000










Gluconeogenesis from lipids in seeds BioPath 61 0.037 11 0.054










transport facilitation FunCat 61 0.000 10 0.000










acetate fermentation AraCyc 60 0.000 12 0.031










Inositol phosphate metabolism KEGG 59 0.001 11 0.145










additional photosystem II components BioPath 58 0.000 7 0.050










fructose degradation (anaerobic) AraCyc 56 0.000 10 0.079










glycolysis IV AraCyc 56 0.000 10 0.087










sorbitol fermentation AraCyc 56 0.000 10 0.103










Sulfur metabolism KEGG 54 0.000 7 0.000










Ascorbate and aldarate metabolism KEGG 51 0.000 6 0.005










sterol biosynthesis BioPath 50 0.000 5 0.052










sterol biosynthesis TAIR-GO 50 0.000 5 0.011










Pentose phosphate pathway KEGG 50 0.000 11 0.000










Citrate cycle (TCA cycle) KEGG 48 0.000 8 0.008










Selenoamino acid metabolism KEGG 48 0.000 6 0.014










Synthesis of membrane lipids in endomembrane system AcylLipid 47 0.000 6 0.043










cysteine biosynthesis I AraCyc 46 0.000 8 0.023










Cysteine metabolism KEGG 46 0.000 7 0.002










photorespiration AraCyc 45 0.000 8 0.009










gluconeogenesis AraCyc 44 0.001 6 0.220










glycerol degradation II AraCyc 44 0.000 8 0.053










sulfate assimilation III AraCyc 44 0.001 6 0.063










Glutamate metabolism KEGG 44 0.003 5 0.175










Shikimate pathway LitPath 44 0.040 5 0.317










development TAIR-GO 43 0.002 5 0.148










chlorophyll binding TAIR-GO 42 0.000 5 0.001










TCA cycle -- aerobic respiration AraCyc 42 0.002 8 0.067










aerobic respiration FunCat 42 0.000 6 0.000










respiration FunCat 42 0.000 6 0.000










Carotenoid and abscisic acid metabolism LitPath 42 0.000 5 0.027










Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 40 0.001 4 0.212










TCA cycle variation VIII AraCyc 40 0.022 7 0.164










brassinosteroid biosynthesis LitPath 40 0.000 4 0.085










sterol and brassinosteroid biosynthesis LitPath 40 0.000 4 0.022



























page created by Vincent Sauveplane 05/02/06