| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP71B9 (At2g02580) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are co-expressed pathways in the organ data set only | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points) | CYP71B9 (At2g02580) | |||||||||||||||
| max. difference between log2-ratios: | 5.0 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.6 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to organ heatmap | ||||||||||
| abscisic acid biosynthesis | TAIR-GO | 12 | 0.000 | 2 | 0.000 |
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| abscisic acid biosynthesis | AraCyc | 12 | 0.000 | 2 | 0.000 | |||||||||||
| isoprenoid biosynthesis | FunCat | 12 | 0.000 | 2 | 0.020 | |||||||||||
| lipid, fatty acid and isoprenoid biosynthesis | FunCat | 12 | 0.000 | 2 | 0.014 | |||||||||||
| abscisic acid biosynthesis | LitPath | 12 | 0.000 | 2 | 0.000 | |||||||||||
| Carotenoid and abscisic acid metabolism | LitPath | 12 | 0.000 | 2 | 0.006 | |||||||||||
| Biosynthesis of prenyl diphosphates | BioPath | 10 | 0.000 | 1 | 0.059 | |||||||||||
| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria | BioPath | 10 | 0.000 | 1 | 0.110 | |||||||||||
| pectin metabolism | BioPath | 10 | 0.000 | 5 | 0.002 | |||||||||||
| sucrose metabolism | BioPath | 10 | 0.000 | 1 | 0.012 | |||||||||||
| dolichol biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| response to hypoxia | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| sucrose biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.004 | |||||||||||
| sucrose degradation III | AraCyc | 10 | 0.000 | 1 | 0.002 | |||||||||||
| glycolysis and gluconeogenesis | FunCat | 10 | 0.006 | 1 | 0.312 | |||||||||||
| Starch and sucrose metabolism | KEGG | 10 | 0.000 | 1 | 0.004 | |||||||||||
| polyprenyl diphosphate biosynthesis | LitPath | 10 | 0.000 | 1 | 0.009 | |||||||||||
| fatty acid elongation | TAIR-GO | 8 | 0.000 | 1 | 0.001 | |||||||||||
| fatty acid metabolism | TAIR-GO | 8 | 0.000 | 1 | 0.013 | |||||||||||
| long-chain fatty acid metabolism | TAIR-GO | 8 | 0.000 | 1 | 0.006 | |||||||||||
| very-long-chain fatty acid metabolism | TAIR-GO | 8 | 0.000 | 1 | 0.005 | |||||||||||
| Fatty acid elongation and wax and cutin metabolism | AcylLipid | 8 | 0.002 | 1 | 0.232 | |||||||||||
| secondary metabolism | TAIR-GO | 7 | 0.000 | 1 | 0.000 | |||||||||||
| degradation | FunCat | 7 | 0.000 | 1 | 0.025 | |||||||||||
| protein degradation | FunCat | 7 | 0.000 | 1 | 0.014 | |||||||||||
| Pathways co-expressed in the Stress data set ( with more than 10 annotation points) | CYP71B9 (At2g02580) | |||||||||||||||
| max. difference between log2-ratios: | 7.0 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 3.0 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points) | CYP71B9 (At2g02580) | |||||||||||||||
| max. difference between log2-ratios: | 1.2 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.2 | |||||||||||||||
| Link to hormones etc. heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) | CYP71B9 (At2g02580) | |||||||||||||||
| max. difference between log2-ratios: | 3.5 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 0.9 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| there are no co-expressed genes with more than 6 annotation points |
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| page created by Juergen Ehlting | 07/05/06 | |||||||||||||||