Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP720A1 (At1g73340) save all data as Tab Delimited Table










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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.



















There are no co-expressed pathways common in all 3 data sets




































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.









































For more information on how these pathway maps were generated please read the methods page
























































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP720A1 (At1g73340)







max. difference between log2-ratios: 3.8











max. difference between log2-ratios excluding lowest and highest 5%: 0.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






mono-/sesqui-/di-terpene biosynthesis LitPath 8 0.000 2 0.004


terpenoid metabolism LitPath 8 0.000 2 0.005

calcium-mediated signaling TAIR-GO 7 0.000 1 0.000

cell growth / morphogenesis FunCat 7 0.000 1 0.000

cytoskeleton FunCat 7 0.000 1 0.000

directional cell growth (morphogenesis) FunCat 7 0.000 1 0.000










intracellular signalling FunCat 7 0.000 1 0.015










Phosphatidylinositol signaling system KEGG 7 0.000 1 0.000










Signal Transduction KEGG 7 0.000 1 0.000












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP720A1 (At1g73340)







max. difference between log2-ratios: 5.6











max. difference between log2-ratios excluding lowest and highest 5%: 2.5

















Link to stress heatmap






There are no co-expressed genes with more than 6 annotation points



















































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP720A1 (At1g73340)







max. difference between log2-ratios: 4.1











max. difference between log2-ratios excluding lowest and highest 5%: 1.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Leaf Glycerolipid Biosynthesis BioPath 28 0.000 4 0.010





Leaf Glycerolipid Biosynthesis in Plastid BioPath 28 0.000 4 0.000




Synthesis of membrane lipids in plastids AcylLipid 20 0.000 2 0.003




Phenylpropanoid Metabolism BioPath 13 0.009 3 0.043




gibberellin biosynthesis AraCyc 13 0.000 2 0.000




Benzoate degradation via CoA ligation KEGG 11 0.000 2 0.045




Inositol phosphate metabolism KEGG 11 0.000 2 0.055




Nicotinate and nicotinamide metabolism KEGG 11 0.000 2 0.036




Glucosyltransferases for benzoic acids BioPath 10 0.000 1 0.004




cellular response to phosphate starvation TAIR-GO 10 0.000 1 0.002




galactolipid biosynthesis TAIR-GO 10 0.000 1 0.001




lipid biosynthesis TAIR-GO 10 0.000 1 0.001










lipid metabolism TAIR-GO 10 0.000 1 0.000










phospholipid metabolism TAIR-GO 10 0.000 1 0.000










glycosylglyceride biosynthesis AraCyc 10 0.000 1 0.001










phospholipid biosynthesis II AraCyc 10 0.000 1 0.011










triacylglycerol biosynthesis AraCyc 10 0.000 1 0.001










C-compound and carbohydrate utilization FunCat 10 0.000 1 0.000










lipid, fatty acid and isoprenoid metabolism FunCat 10 0.000 1 0.009










calcium ion transport TAIR-GO 9 0.000 1 0.000










cytokinin catabolism TAIR-GO 9 0.000 1 0.001










gibberellic acid biosynthesis TAIR-GO 9 0.000 1 0.004










metal ion transport TAIR-GO 9 0.000 1 0.000










N-terminal protein myristoylation TAIR-GO 9 0.000 1 0.004










cytokinins degradation AraCyc 9 0.000 1 0.000










intracellular signalling FunCat 9 0.000 1 0.015










Membrane Transport KEGG 9 0.000 1 0.016










Other ion-coupled transporters KEGG 9 0.000 1 0.005










Ion channels KEGG 8 0.000 4 0.000










Ligand-Receptor Interaction KEGG 8 0.000 4 0.000










Synthesis of fatty acids in plastids AcylLipid 8 0.009 2 0.027





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP720A1 (At1g73340)







max. difference between log2-ratios: 6.5











max. difference between log2-ratios excluding lowest and highest 5%: 0.7











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Phenylpropanoid Metabolism BioPath 88 0.000 13 0.000



Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 62 0.000 9 0.000


Shikimate pathway LitPath 62 0.000 9 0.000


tryptophan biosynthesis TAIR-GO 58 0.000 8 0.000


Trp biosyntesis LitPath 58 0.000 8 0.000


tryptophan biosynthesis AraCyc 48 0.000 7 0.000


Biosynthesis of Amino Acids and Derivatives BioPath 46 0.000 7 0.051


Phenylpropanoid pathway LitPath 46 0.000 8 0.020


response to pathogenic bacteria TAIR-GO 38 0.000 6 0.000


Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 32 0.000 4 0.001


lignin biosynthesis AraCyc 30 0.000 5 0.000


Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 28 0.000 4 0.006


core phenylpropanoid metabolism BioPath 26 0.000 4 0.005


biosynthesis of proto- and siroheme AraCyc 24 0.000 3 0.007










biogenesis of chloroplast FunCat 24 0.000 3 0.041










secondary metabolism FunCat 22 0.000 4 0.009










Propanoate metabolism KEGG 22 0.000 3 0.008










Benzoate degradation via CoA ligation KEGG 21 0.000 7 0.002










Inositol phosphate metabolism KEGG 21 0.000 7 0.004










Nicotinate and nicotinamide metabolism KEGG 21 0.000 7 0.001










Chlorophyll biosynthesis and breakdown BioPath 20 0.000 2 0.047










amino acid metabolism FunCat 20 0.013 3 0.179










Porphyrin and chlorophyll metabolism KEGG 20 0.000 2 0.035










Lipid signaling AcylLipid 20 0.005 7 0.073










gibberellic acid catabolism TAIR-GO 19 0.000 2 0.000










C-compound and carbohydrate utilization FunCat 19 0.000 5 0.000










Nucleotide sugars metabolism KEGG 18 0.000 5 0.000










defense response TAIR-GO 17 0.000 3 0.001










ethylene biosynthesis TAIR-GO 16 0.000 2 0.001










response to wounding TAIR-GO 16 0.000 3 0.002










metabolism of the cysteine - aromatic group FunCat 16 0.000 2 0.001










Stilbene, coumarine and lignin biosynthesis KEGG 15 0.012 4 0.127










toxin catabolism TAIR-GO 14 0.000 7 0.000










chlorophyll biosynthesis AraCyc 14 0.001 2 0.075










Phenylalanine metabolism KEGG 14 0.006 4 0.084










Glycan Biosynthesis and Metabolism KEGG 13 0.019 5 0.007










cellulose biosynthesis BioPath 12 0.016 2 0.100










colanic acid building blocks biosynthesis AraCyc 12 0.002 2 0.090










flavonoid biosynthesis AraCyc 12 0.000 2 0.014










Alanine and aspartate metabolism KEGG 12 0.000 2 0.050










beta-Alanine metabolism KEGG 12 0.000 2 0.016










Butanoate metabolism KEGG 12 0.000 2 0.029










Fructose and mannose metabolism KEGG 12 0.013 2 0.126










Glutamate metabolism KEGG 12 0.024 2 0.108










Taurine and hypotaurine metabolism KEGG 12 0.000 2 0.000



























page created by Alexandre OLRY 05/23/06