Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP72A14 / CYP72A11 / CYP72A12 (At3g14680 / At3g14650 / At3g14660)	save all data as Tab Delimited Table
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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
Phenylpropanoid Metabolism	BioPath	89	12
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)						CYP72A14 / CYP72A11 / CYP72A12 (At3g14680 / At3g14650 / At3g14660)
max. difference between log2-ratios:				6.8
max. difference between log2-ratios excluding lowest and highest 5%:				5.9
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Stilbene, coumarine and lignin biosynthesis	KEGG	33	0.000	10	0.000
Phenylpropanoid Metabolism	BioPath	26	0.000	4	0.004
glycolysis and gluconeogenesis	FunCat	20	0.000	3	0.008
monoterpenoid biosynthesis	TAIR-GO	19	0.000	2	0.000
mono-/sesqui-/di-terpene biosynthesis	LitPath	19	0.000	2	0.022
monoterpene biosynthesis	LitPath	19	0.000	2	0.000
terpenoid metabolism	LitPath	19	0.000	2	0.024
C-compound and carbohydrate metabolism	FunCat	18	0.002	4	0.033
Lipid signaling	AcylLipid	18	0.000	3	0.069
Ascorbate and aldarate metabolism	KEGG	17	0.000	2	0.004
Fluorene degradation	KEGG	17	0.000	2	0.001
gamma-Hexachlorocyclohexane degradation	KEGG	17	0.000	2	0.001
detoxification	FunCat	16	0.000	4	0.000
Methane metabolism	KEGG	16	0.000	8	0.000
Phenylalanine metabolism	KEGG	16	0.000	8	0.000
Prostaglandin and leukotriene metabolism	KEGG	16	0.000	8	0.000
Intermediary Carbon Metabolism	BioPath	14	0.000	2	0.075
glyoxylate cycle	AraCyc	14	0.000	2	0.000
TCA cycle variation VII	AraCyc	14	0.000	2	0.012
TCA cycle variation VIII	AraCyc	14	0.000	2	0.005
Glyoxylate and dicarboxylate metabolism	KEGG	14	0.000	2	0.005
Pyruvate metabolism	KEGG	14	0.000	2	0.061
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP72A14 / CYP72A11 / CYP72A12 (At3g14680 / At3g14650 / At3g14660)
max. difference between log2-ratios:				7.1
max. difference between log2-ratios excluding lowest and highest 5%:				1.2
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
Glucosyltransferases for benzoic acids	BioPath	10	0.000	1	0.000
Phenylpropanoid Metabolism	BioPath	10	0.000	1	0.023
cell plate formation (sensu Magnoliophyta)	TAIR-GO	10	0.000	1	0.000
leucine catabolism	TAIR-GO	10	0.000	1	0.000
leucine degradation I	AraCyc	10	0.000	1	0.000
leucine degradation II	AraCyc	10	0.000	1	0.000
amino acid metabolism	FunCat	10	0.000	1	0.000
Valine, leucine and isoleucine degradation	KEGG	10	0.000	1	0.000
metabolism of acyl-lipids in mitochondria	AcylLipid	10	0.000	1	0.000
Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)						CYP72A14 / CYP72A11 / CYP72A12 (At3g14680 / At3g14650 / At3g14660)
max. difference between log2-ratios:				4.7
max. difference between log2-ratios excluding lowest and highest 5%:				1.2
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Phenylpropanoid Metabolism	BioPath	43	0.000	6	0.001
Biosynthesis of Amino Acids and Derivatives	BioPath	30	0.000	3	0.067
Glucosyltransferases for benzoic acids	BioPath	30	0.000	3	0.000
Glutathione metabolism	BioPath	30	0.000	3	0.004
sulfate assimilation III	AraCyc	22	0.000	3	0.000
nitrogen and sulfur metabolism	FunCat	20	0.000	2	0.000
Stilbene, coumarine and lignin biosynthesis	KEGG	19	0.000	3	0.005
toxin catabolism	TAIR-GO	18	0.000	5	0.000
C-compound and carbohydrate utilization	FunCat	16	0.000	2	0.000
jasmonic acid biosynthesis	TAIR-GO	12	0.000	2	0.001
cysteine biosynthesis I	AraCyc	12	0.000	2	0.004
jasmonic acid biosynthesis	AraCyc	12	0.000	2	0.000
lignin biosynthesis	AraCyc	12	0.000	2	0.005
phenylalanine degradation I	AraCyc	12	0.000	2	0.001
tyrosine degradation	AraCyc	12	0.000	2	0.000
Phenylalanine metabolism	KEGG	12	0.000	2	0.024
Tyrosine metabolism	KEGG	12	0.000	2	0.003
Phenylpropanoid pathway	LitPath	12	0.000	2	0.002
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP72A14 / CYP72A11 / CYP72A12 (At3g14680 / At3g14650 / At3g14660)
max. difference between log2-ratios:				3.6
max. difference between log2-ratios excluding lowest and highest 5%:				1.6
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Valine, leucine and isoleucine degradation	KEGG	15	0.000	3	0.000
metabolism of acyl-lipids in mitochondria	AcylLipid	13	0.000	2	0.000
core phenylpropanoid metabolism	BioPath	10	0.000	1	0.006
Phenylpropanoid Metabolism	BioPath	10	0.000	1	0.071
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone)	BioPath	10	0.000	1	0.018
Tocopherol biosynthesis	BioPath	10	0.000	1	0.000
carotenoid biosynthesis	TAIR-GO	10	0.000	1	0.000
lignin biosynthesis	TAIR-GO	10	0.000	1	0.001
plastoquinone biosynthesis	TAIR-GO	10	0.000	1	0.000
vitamin E biosynthesis	TAIR-GO	10	0.000	1	0.000
lignin biosynthesis	AraCyc	10	0.000	1	0.004
phenylalanine degradation I	AraCyc	10	0.000	1	0.002
plastoquinone biosynthesis	AraCyc	10	0.000	1	0.000
tyrosine degradation	AraCyc	10	0.000	1	0.000
vitamin E biosynthesis	AraCyc	10	0.000	1	0.000
Phenylalanine metabolism	KEGG	10	0.000	1	0.016
Tyrosine metabolism	KEGG	10	0.000	1	0.004
Phenylpropanoid pathway	LitPath	10	0.000	1	0.000
leucine catabolism	TAIR-GO	9	0.000	1	0.000
leucine degradation I	AraCyc	9	0.000	1	0.001
leucine degradation II	AraCyc	9	0.000	1	0.000
page created by Juergen Ehlting	06/29/06