Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP72A15 (At3g14690) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.





Pathway Source Sum of scores Sum of genes






carotenoid biosynthesis AraCyc 94 11






Glutathione metabolism KEGG 93 15








carotenoid biosynthesis TAIR-GO 58 7













To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP72A15 (At3g14690)







max. difference between log2-ratios: 5.5











max. difference between log2-ratios excluding lowest and highest 5%: 4.6











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 54 0.000 6 0.001


Carotenoid and abscisic acid metabolism LitPath 50 0.000 6 0.000

Carotenoid biosynthesis BioPath 44 0.000 5 0.000

carotenoid biosynthesis AraCyc 44 0.000 5 0.000

carotenid biosynthesis LitPath 44 0.000 5 0.000

C-compound and carbohydrate metabolism FunCat 34 0.000 10 0.001

Biosynthesis of steroids KEGG 34 0.000 5 0.000

biogenesis of chloroplast FunCat 22 0.000 3 0.010

Pathway for nuclear-encoded, thylakoid-localized proteins BioPath 20 0.000 2 0.001

Folding, Sorting and Degradation KEGG 20 0.000 2 0.061

Protein export KEGG 20 0.000 2 0.002

carotene biosynthesis TAIR-GO 18 0.000 2 0.000

xanthophyll cycle AraCyc 18 0.000 2 0.000

photorespiration AraCyc 17 0.000 4 0.000










Biosynthesis of prenyl diphosphates BioPath 14 0.002 2 0.042










response to water deprivation TAIR-GO 14 0.000 2 0.000










Carbon fixation KEGG 14 0.000 3 0.002










polyprenyl diphosphate biosynthesis LitPath 14 0.000 2 0.001










glycine biosynthesis I AraCyc 13 0.000 3 0.005










superpathway of serine and glycine biosynthesis II AraCyc 13 0.000 3 0.000










jasmonic acid biosynthesis TAIR-GO 12 0.000 2 0.005










response to ethylene stimulus TAIR-GO 12 0.000 3 0.000










Calvin cycle AraCyc 12 0.000 2 0.022










jasmonic acid biosynthesis AraCyc 12 0.000 2 0.003










biosynthesis of derivatives of homoisopentenyl pyrophosphate FunCat 12 0.000 2 0.001










glycolysis and gluconeogenesis FunCat 12 0.042 3 0.081










photosynthesis FunCat 12 0.000 3 0.003










Glyoxylate and dicarboxylate metabolism KEGG 12 0.000 3 0.000










Pentose phosphate pathway KEGG 12 0.000 2 0.005












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP72A15 (At3g14690)







max. difference between log2-ratios: 10.0











max. difference between log2-ratios excluding lowest and highest 5%: 2.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Carotenoid biosynthesis BioPath 8 0.000 1 0.000
Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 8 0.000 1 0.006
abscisic acid biosynthesis TAIR-GO 8 0.000 1 0.000
response to osmotic stress TAIR-GO 8 0.000 1 0.000










response to water deprivation TAIR-GO 8 0.000 1 0.000










sugar mediated signaling TAIR-GO 8 0.000 1 0.000










xanthophyll biosynthesis TAIR-GO 8 0.000 1 0.000










carotenoid biosynthesis AraCyc 8 0.000 1 0.000










xanthophyll cycle AraCyc 8 0.000 1 0.000










carotenid biosynthesis LitPath 8 0.000 1 0.002










Carotenoid and abscisic acid metabolism LitPath 8 0.000 1 0.009










triterpene, sterol, and brassinosteroid metabolism LitPath 8 0.000 2 0.008












































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP72A15 (At3g14690)







max. difference between log2-ratios: 3.5











max. difference between log2-ratios excluding lowest and highest 5%: 1.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Phenylpropanoid Metabolism BioPath 53 0.000 7 0.011





Glutathione metabolism KEGG 32 0.000 6 0.000




Glucosyltransferases for benzoic acids BioPath 30 0.000 3 0.000




Glutathione metabolism BioPath 24 0.000 3 0.035




toxin catabolism TAIR-GO 24 0.000 8 0.000




C-compound and carbohydrate metabolism FunCat 22 0.004 6 0.015




IAA biosynthesis AraCyc 18 0.000 2 0.001




Tryptophan metabolism KEGG 17 0.000 3 0.001




additional photosystem II components BioPath 16 0.000 2 0.032




Early light-inducible proteins BioPath 16 0.000 2 0.000




alanine biosynthesis II AraCyc 14 0.000 3 0.001




lignin biosynthesis AraCyc 14 0.000 3 0.004




phenylalanine biosynthesis II AraCyc 14 0.000 3 0.000










phenylalanine degradation I AraCyc 14 0.000 3 0.001










tyrosine degradation AraCyc 14 0.000 3 0.000










stress response FunCat 14 0.000 2 0.000










transport FunCat 14 0.000 2 0.000










Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 14 0.000 3 0.004










Phenylpropanoid pathway LitPath 14 0.000 3 0.021










Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 12 0.016 2 0.076










Phenylalanine metabolism KEGG 12 0.000 2 0.139










Stilbene, coumarine and lignin biosynthesis KEGG 12 0.001 2 0.182










Tyrosine metabolism KEGG 12 0.000 2 0.021










ascorbate glutathione cycle AraCyc 11 0.000 2 0.002










nitrogen and sulfur utilization FunCat 11 0.000 2 0.000










Cyanoamino acid metabolism KEGG 11 0.000 2 0.006





























































Pathways co-expressed in the Mutant data set (with more than 25 annotation points)
CYP72A15 (At3g14690)







max. difference between log2-ratios: 5.8











max. difference between log2-ratios excluding lowest and highest 5%: 1.5











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 71 0.000 10 0.001



Pyruvate metabolism KEGG 64 0.000 9 0.006


Intermediary Carbon Metabolism BioPath 54 0.018 7 0.427


Oxidative phosphorylation KEGG 52 0.000 13 0.000


transport FunCat 48 0.000 11 0.000


Glycerolipid metabolism KEGG 45 0.000 6 0.002


Glycolysis / Gluconeogenesis KEGG 41 0.008 5 0.254


tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) FunCat 40 0.011 5 0.382


photorespiration AraCyc 38 0.000 6 0.001


Glycan Biosynthesis and Metabolism KEGG 33 0.004 6 0.058


ascorbic acid biosynthesis BioPath 32 0.000 4 0.002


Ascorbate and aldarate metabolism KEGG 32 0.000 4 0.011


Bile acid biosynthesis KEGG 31 0.000 4 0.001










Fatty acid metabolism KEGG 31 0.000 4 0.037










Glutathione metabolism BioPath 30 0.019 5 0.092










ATP-dependent proteolysis TAIR-GO 30 0.000 6 0.000










transport facilitation FunCat 30 0.000 6 0.000










Carotenoid and abscisic acid metabolism LitPath 30 0.000 4 0.007










energy FunCat 28 0.000 6 0.000










plant / fungal specific systemic sensing and response FunCat 28 0.000 3 0.012










plant hormonal regulation FunCat 28 0.000 3 0.012










Glutathione metabolism KEGG 28 0.003 4 0.080










Valine, leucine and isoleucine degradation KEGG 28 0.000 4 0.042










isoleucine degradation I AraCyc 27 0.000 4 0.004










isoleucine degradation III AraCyc 27 0.000 4 0.000










leucine degradation I AraCyc 27 0.000 4 0.004










leucine degradation II AraCyc 27 0.000 4 0.000










Chloroplastic protein turnover BioPath 26 0.000 5 0.000



























page created by Juergen Ehlting 06/28/06