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Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points) |
|
CYP72A7 (At3g14610) |
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max. difference between log2-ratios: |
5.3 |
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max. difference between log2-ratios excluding lowest and highest 5%: |
1.9 |
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Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
|
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Glutamate metabolism |
KEGG |
31 |
0.000 |
4 |
0.001 |
|
|
|
C-compound and carbohydrate metabolism |
FunCat |
25 |
0.003 |
5 |
0.054 |
|
|
Glycolysis / Gluconeogenesis |
KEGG |
21 |
0.000 |
4 |
0.010 |
|
|
Nitrogen metabolism |
KEGG |
19 |
0.000 |
2 |
0.017 |
|
|
Intermediary Carbon Metabolism |
BioPath |
18 |
0.000 |
4 |
0.001 |
|
|
fermentation |
FunCat |
17 |
0.000 |
3 |
0.000 |
|
|
Tyrosine metabolism |
KEGG |
17 |
0.000 |
3 |
0.005 |
|
|
amino acid metabolism |
FunCat |
16 |
0.002 |
2 |
0.094 |
|
|
Calvin cycle |
AraCyc |
15 |
0.000 |
3 |
0.001 |
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Alanine and aspartate metabolism |
KEGG |
15 |
0.000 |
2 |
0.016 |
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|
ammonia assimilation cycle |
AraCyc |
14 |
0.000 |
2 |
0.000 |
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|
Methane metabolism |
KEGG |
13 |
0.000 |
3 |
0.050 |
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Tryptophan metabolism |
KEGG |
13 |
0.000 |
2 |
0.020 |
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non-oxidative branch of the pentose phosphate pathway |
AraCyc |
11 |
0.000 |
2 |
0.001 |
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oxidative branch of the pentose phosphate pathway |
AraCyc |
11 |
0.000 |
2 |
0.001 |
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|
1- and 2-Methylnaphthalene degradation |
KEGG |
11 |
0.000 |
2 |
0.001 |
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|
Bile acid biosynthesis |
KEGG |
11 |
0.000 |
2 |
0.002 |
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Fatty acid metabolism |
KEGG |
11 |
0.003 |
2 |
0.020 |
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Glycerolipid metabolism |
KEGG |
11 |
0.001 |
2 |
0.018 |
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Pathways co-expressed in the Stress data set ( with more than 9 annotation points) |
|
CYP72A7 (At3g14610) |
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max. difference between log2-ratios: |
4.5 |
|
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max. difference between log2-ratios excluding lowest and highest 5%: |
1.0 |
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Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to stress heatmap |
|
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Stilbene, coumarine and lignin biosynthesis |
KEGG |
22 |
0.000 |
7 |
0.000 |
|
Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
14 |
0.000 |
2 |
0.036 |
detoxification |
FunCat |
12 |
0.000 |
2 |
0.000 |
Methane metabolism |
KEGG |
12 |
0.000 |
6 |
0.000 |
Phenylalanine metabolism |
KEGG |
12 |
0.000 |
6 |
0.000 |
Prostaglandin and leukotriene metabolism |
KEGG |
12 |
0.000 |
6 |
0.000 |
fatty acid metabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
detoxification involving cytochrome P450 |
FunCat |
10 |
0.000 |
1 |
0.001 |
Ascorbate and aldarate metabolism |
KEGG |
10 |
0.000 |
1 |
0.014 |
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Fluorene degradation |
KEGG |
10 |
0.000 |
1 |
0.005 |
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gamma-Hexachlorocyclohexane degradation |
KEGG |
10 |
0.000 |
1 |
0.007 |
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Miscellaneous acyl lipid metabolism |
AcylLipid |
10 |
0.005 |
5 |
0.002 |
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fatty acid modulation |
LitPath |
10 |
0.000 |
1 |
0.000 |
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Pathways co-expressed in the Mutant data set (with more than 9 annotation points) |
|
CYP72A7 (At3g14610) |
|
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max. difference between log2-ratios: |
3.6 |
|
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max. difference between log2-ratios excluding lowest and highest 5%: |
1.8 |
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Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
|
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Valine, leucine and isoleucine degradation |
KEGG |
18 |
0.000 |
3 |
0.001 |
|
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Phenylalanine metabolism |
KEGG |
16 |
0.000 |
3 |
0.033 |
|
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|
Alkaloid biosynthesis I |
KEGG |
14 |
0.000 |
2 |
0.003 |
|
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Arginine and proline metabolism |
KEGG |
14 |
0.000 |
2 |
0.021 |
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Tyrosine metabolism |
KEGG |
14 |
0.000 |
2 |
0.018 |
|
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|
metabolism of acyl-lipids in mitochondria |
AcylLipid |
14 |
0.000 |
2 |
0.000 |
|
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aspartate degradation I |
AraCyc |
12 |
0.000 |
2 |
0.002 |
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aspartate degradation II |
AraCyc |
12 |
0.000 |
2 |
0.000 |
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Gluconeogenesis from lipids in seeds |
BioPath |
10 |
0.000 |
1 |
0.002 |
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|
leaf senescence |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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leucine catabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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nitrogen compound metabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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phenylpropanoid metabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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|
asparagine biosynthesis I |
AraCyc |
10 |
0.000 |
1 |
0.002 |
|
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asparagine degradation I |
AraCyc |
10 |
0.000 |
1 |
0.009 |
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aspartate biosynthesis and degradation |
AraCyc |
10 |
0.000 |
1 |
0.001 |
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glutamine degradation III |
AraCyc |
10 |
0.000 |
1 |
0.004 |
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|
leucine degradation I |
AraCyc |
10 |
0.000 |
1 |
0.021 |
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|
leucine degradation II |
AraCyc |
10 |
0.000 |
1 |
0.005 |
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amino acid metabolism |
FunCat |
10 |
0.000 |
1 |
0.027 |
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|
biogenesis of chloroplast |
FunCat |
10 |
0.000 |
1 |
0.010 |
|
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|
biosynthesis of phenylpropanoids |
FunCat |
10 |
0.000 |
1 |
0.003 |
|
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|
biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine |
FunCat |
10 |
0.000 |
1 |
0.003 |
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lipid, fatty acid and isoprenoid degradation |
FunCat |
10 |
0.000 |
1 |
0.002 |
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|
metabolism of the aspartate family |
FunCat |
10 |
0.000 |
1 |
0.000 |
|
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|
nitrogen and sulfur biogenesis of chloroplast |
FunCat |
10 |
0.000 |
1 |
0.000 |
|
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|
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|
|
Alanine and aspartate metabolism |
KEGG |
10 |
0.000 |
1 |
0.070 |
|
|
|
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|
|
Carbon fixation |
KEGG |
10 |
0.010 |
1 |
0.234 |
|
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|
|
Cysteine metabolism |
KEGG |
10 |
0.000 |
1 |
0.055 |
|
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|
Glutamate metabolism |
KEGG |
10 |
0.002 |
1 |
0.123 |
|
|
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|
Novobiocin biosynthesis |
KEGG |
10 |
0.000 |
1 |
0.014 |
|
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|
Phenylalanine, tyrosine and tryptophan biosynthesis |
KEGG |
10 |
0.001 |
1 |
0.123 |
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|
Phenylpropanoid pathway |
LitPath |
10 |
0.000 |
1 |
0.000 |
|
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