Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP72A7 (At3g14610) save all data as Tab Delimited Table










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Pathways co-expressed in the 3 data sets applicable (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.



















There are no pathways co-expressed in all three data sets




































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.







































For more information on how these pathway maps were generated please read the methods page
























































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP72A7 (At3g14610)







max. difference between log2-ratios: 5.3











max. difference between log2-ratios excluding lowest and highest 5%: 1.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Glutamate metabolism KEGG 31 0.000 4 0.001


C-compound and carbohydrate metabolism FunCat 25 0.003 5 0.054

Glycolysis / Gluconeogenesis KEGG 21 0.000 4 0.010

Nitrogen metabolism KEGG 19 0.000 2 0.017

Intermediary Carbon Metabolism BioPath 18 0.000 4 0.001

fermentation FunCat 17 0.000 3 0.000

Tyrosine metabolism KEGG 17 0.000 3 0.005

amino acid metabolism FunCat 16 0.002 2 0.094

Calvin cycle AraCyc 15 0.000 3 0.001










Alanine and aspartate metabolism KEGG 15 0.000 2 0.016










ammonia assimilation cycle AraCyc 14 0.000 2 0.000










Methane metabolism KEGG 13 0.000 3 0.050










Tryptophan metabolism KEGG 13 0.000 2 0.020










non-oxidative branch of the pentose phosphate pathway AraCyc 11 0.000 2 0.001










oxidative branch of the pentose phosphate pathway AraCyc 11 0.000 2 0.001










1- and 2-Methylnaphthalene degradation KEGG 11 0.000 2 0.001










Bile acid biosynthesis KEGG 11 0.000 2 0.002










Fatty acid metabolism KEGG 11 0.003 2 0.020










Glycerolipid metabolism KEGG 11 0.001 2 0.018












































Pathways co-expressed in the Stress data set ( with more than 9 annotation points)
CYP72A7 (At3g14610)







max. difference between log2-ratios: 4.5











max. difference between log2-ratios excluding lowest and highest 5%: 1.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Stilbene, coumarine and lignin biosynthesis KEGG 22 0.000 7 0.000
Fatty acid elongation and wax and cutin metabolism AcylLipid 14 0.000 2 0.036
detoxification FunCat 12 0.000 2 0.000
Methane metabolism KEGG 12 0.000 6 0.000
Phenylalanine metabolism KEGG 12 0.000 6 0.000
Prostaglandin and leukotriene metabolism KEGG 12 0.000 6 0.000
fatty acid metabolism TAIR-GO 10 0.000 1 0.000
detoxification involving cytochrome P450 FunCat 10 0.000 1 0.001
Ascorbate and aldarate metabolism KEGG 10 0.000 1 0.014










Fluorene degradation KEGG 10 0.000 1 0.005










gamma-Hexachlorocyclohexane degradation KEGG 10 0.000 1 0.007










Miscellaneous acyl lipid metabolism AcylLipid 10 0.005 5 0.002










fatty acid modulation LitPath 10 0.000 1 0.000












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP72A7 (At3g14610)







max. difference between log2-ratios: 1.5











max. difference between log2-ratios excluding lowest and highest 5%: 0.0

















Link to hormones etc. heatmap






There are no co-expressed genes with more than 6 annotation points in this data set


















































Pathways co-expressed in the Mutant data set (with more than 9 annotation points)
CYP72A7 (At3g14610)







max. difference between log2-ratios: 3.6











max. difference between log2-ratios excluding lowest and highest 5%: 1.8











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Valine, leucine and isoleucine degradation KEGG 18 0.000 3 0.001



Phenylalanine metabolism KEGG 16 0.000 3 0.033


Alkaloid biosynthesis I KEGG 14 0.000 2 0.003


Arginine and proline metabolism KEGG 14 0.000 2 0.021


Tyrosine metabolism KEGG 14 0.000 2 0.018


metabolism of acyl-lipids in mitochondria AcylLipid 14 0.000 2 0.000










aspartate degradation I AraCyc 12 0.000 2 0.002










aspartate degradation II AraCyc 12 0.000 2 0.000










Gluconeogenesis from lipids in seeds BioPath 10 0.000 1 0.002










leaf senescence TAIR-GO 10 0.000 1 0.000










leucine catabolism TAIR-GO 10 0.000 1 0.000










nitrogen compound metabolism TAIR-GO 10 0.000 1 0.000










phenylpropanoid metabolism TAIR-GO 10 0.000 1 0.000










asparagine biosynthesis I AraCyc 10 0.000 1 0.002










asparagine degradation I AraCyc 10 0.000 1 0.009










aspartate biosynthesis and degradation AraCyc 10 0.000 1 0.001










glutamine degradation III AraCyc 10 0.000 1 0.004










leucine degradation I AraCyc 10 0.000 1 0.021










leucine degradation II AraCyc 10 0.000 1 0.005










amino acid metabolism FunCat 10 0.000 1 0.027










biogenesis of chloroplast FunCat 10 0.000 1 0.010










biosynthesis of phenylpropanoids FunCat 10 0.000 1 0.003










biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine FunCat 10 0.000 1 0.003










lipid, fatty acid and isoprenoid degradation FunCat 10 0.000 1 0.002










metabolism of the aspartate family FunCat 10 0.000 1 0.000










nitrogen and sulfur biogenesis of chloroplast FunCat 10 0.000 1 0.000










Alanine and aspartate metabolism KEGG 10 0.000 1 0.070










Carbon fixation KEGG 10 0.010 1 0.234










Cysteine metabolism KEGG 10 0.000 1 0.055










Glutamate metabolism KEGG 10 0.002 1 0.123










Novobiocin biosynthesis KEGG 10 0.000 1 0.014










Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 10 0.001 1 0.123










Phenylpropanoid pathway LitPath 10 0.000 1 0.000



























page created by Juergen Ehlting 08/03/06