Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP72A7 (At3g14610)	save all data as Tab Delimited Table
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Pathways co-expressed in the 3 data sets applicable (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
There are no pathways co-expressed in all three data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)						CYP72A7 (At3g14610)
max. difference between log2-ratios:				5.3
max. difference between log2-ratios excluding lowest and highest 5%:				1.9
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Glutamate metabolism	KEGG	31	0.000	4	0.001
C-compound and carbohydrate metabolism	FunCat	25	0.003	5	0.054
Glycolysis / Gluconeogenesis	KEGG	21	0.000	4	0.010
Nitrogen metabolism	KEGG	19	0.000	2	0.017
Intermediary Carbon Metabolism	BioPath	18	0.000	4	0.001
fermentation	FunCat	17	0.000	3	0.000
Tyrosine metabolism	KEGG	17	0.000	3	0.005
amino acid metabolism	FunCat	16	0.002	2	0.094
Calvin cycle	AraCyc	15	0.000	3	0.001
Alanine and aspartate metabolism	KEGG	15	0.000	2	0.016
ammonia assimilation cycle	AraCyc	14	0.000	2	0.000
Methane metabolism	KEGG	13	0.000	3	0.050
Tryptophan metabolism	KEGG	13	0.000	2	0.020
non-oxidative branch of the pentose phosphate pathway	AraCyc	11	0.000	2	0.001
oxidative branch of the pentose phosphate pathway	AraCyc	11	0.000	2	0.001
1- and 2-Methylnaphthalene degradation	KEGG	11	0.000	2	0.001
Bile acid biosynthesis	KEGG	11	0.000	2	0.002
Fatty acid metabolism	KEGG	11	0.003	2	0.020
Glycerolipid metabolism	KEGG	11	0.001	2	0.018
Pathways co-expressed in the Stress data set ( with more than 9 annotation points)						CYP72A7 (At3g14610)
max. difference between log2-ratios:				4.5
max. difference between log2-ratios excluding lowest and highest 5%:				1.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
Stilbene, coumarine and lignin biosynthesis	KEGG	22	0.000	7	0.000
Fatty acid elongation and wax and cutin metabolism	AcylLipid	14	0.000	2	0.036
detoxification	FunCat	12	0.000	2	0.000
Methane metabolism	KEGG	12	0.000	6	0.000
Phenylalanine metabolism	KEGG	12	0.000	6	0.000
Prostaglandin and leukotriene metabolism	KEGG	12	0.000	6	0.000
fatty acid metabolism	TAIR-GO	10	0.000	1	0.000
detoxification involving cytochrome P450	FunCat	10	0.000	1	0.001
Ascorbate and aldarate metabolism	KEGG	10	0.000	1	0.014
Fluorene degradation	KEGG	10	0.000	1	0.005
gamma-Hexachlorocyclohexane degradation	KEGG	10	0.000	1	0.007
Miscellaneous acyl lipid metabolism	AcylLipid	10	0.005	5	0.002
fatty acid modulation	LitPath	10	0.000	1	0.000
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP72A7 (At3g14610)
max. difference between log2-ratios:				1.5
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
						Link to hormones etc. heatmap
There are no co-expressed genes with more than 6 annotation points in this data set
Pathways co-expressed in the Mutant data set (with more than 9 annotation points)						CYP72A7 (At3g14610)
max. difference between log2-ratios:				3.6
max. difference between log2-ratios excluding lowest and highest 5%:				1.8
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Valine, leucine and isoleucine degradation	KEGG	18	0.000	3	0.001
Phenylalanine metabolism	KEGG	16	0.000	3	0.033
Alkaloid biosynthesis I	KEGG	14	0.000	2	0.003
Arginine and proline metabolism	KEGG	14	0.000	2	0.021
Tyrosine metabolism	KEGG	14	0.000	2	0.018
metabolism of acyl-lipids in mitochondria	AcylLipid	14	0.000	2	0.000
aspartate degradation I	AraCyc	12	0.000	2	0.002
aspartate degradation II	AraCyc	12	0.000	2	0.000
Gluconeogenesis from lipids in seeds	BioPath	10	0.000	1	0.002
leaf senescence	TAIR-GO	10	0.000	1	0.000
leucine catabolism	TAIR-GO	10	0.000	1	0.000
nitrogen compound metabolism	TAIR-GO	10	0.000	1	0.000
phenylpropanoid metabolism	TAIR-GO	10	0.000	1	0.000
asparagine biosynthesis I	AraCyc	10	0.000	1	0.002
asparagine degradation I	AraCyc	10	0.000	1	0.009
aspartate biosynthesis and degradation	AraCyc	10	0.000	1	0.001
glutamine degradation III	AraCyc	10	0.000	1	0.004
leucine degradation I	AraCyc	10	0.000	1	0.021
leucine degradation II	AraCyc	10	0.000	1	0.005
amino acid metabolism	FunCat	10	0.000	1	0.027
biogenesis of chloroplast	FunCat	10	0.000	1	0.010
biosynthesis of phenylpropanoids	FunCat	10	0.000	1	0.003
biosynthesis of secondary products derived from L-phenylalanine and L-tyrosine	FunCat	10	0.000	1	0.003
lipid, fatty acid and isoprenoid degradation	FunCat	10	0.000	1	0.002
metabolism of the aspartate family	FunCat	10	0.000	1	0.000
nitrogen and sulfur biogenesis of chloroplast	FunCat	10	0.000	1	0.000
Alanine and aspartate metabolism	KEGG	10	0.000	1	0.070
Carbon fixation	KEGG	10	0.010	1	0.234
Cysteine metabolism	KEGG	10	0.000	1	0.055
Glutamate metabolism	KEGG	10	0.002	1	0.123
Novobiocin biosynthesis	KEGG	10	0.000	1	0.014
Phenylalanine, tyrosine and tryptophan biosynthesis	KEGG	10	0.001	1	0.123
Phenylpropanoid pathway	LitPath	10	0.000	1	0.000
page created by Juergen Ehlting	08/03/06