| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP72C1, SHK1, SOB7 (At1g17060) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are no co-expressed pathways common in all data sets | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP72C1, SHK1, SOB7 (At1g17060) | |||||||||||||||
| max. difference between log2-ratios: | 5.4 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 4.0 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to organ heatmap | ||||||||||
| C-compound and carbohydrate metabolism | FunCat | 15 | 0.000 | 3 | 0.019 |
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| fermentation | FunCat | 13 | 0.000 | 2 | 0.000 | |||||||||||
| Glycolysis / Gluconeogenesis | KEGG | 13 | 0.000 | 2 | 0.003 | |||||||||||
| Translation factors | KEGG | 12 | 0.000 | 2 | 0.005 | |||||||||||
| cellular response to sulfate starvation | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| glucosinolate catabolism | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| IAA biosynthesis | AraCyc | 9 | 0.000 | 1 | 0.000 | |||||||||||
| IAA biosynthesis I | AraCyc | 9 | 0.000 | 1 | 0.000 | |||||||||||
| plant / fungal specific systemic sensing and response | FunCat | 9 | 0.000 | 1 | 0.003 | |||||||||||
| plant hormonal regulation | FunCat | 9 | 0.000 | 1 | 0.003 | |||||||||||
| Benzoate degradation via CoA ligation | KEGG | 9 | 0.000 | 1 | 0.050 | |||||||||||
| Cyanoamino acid metabolism | KEGG | 9 | 0.000 | 1 | 0.004 | |||||||||||
| Nitrogen metabolism | KEGG | 9 | 0.000 | 1 | 0.007 | |||||||||||
| Tryptophan metabolism | KEGG | 9 | 0.000 | 1 | 0.008 | |||||||||||
| 1- and 2-Methylnaphthalene degradation | KEGG | 7 | 0.000 | 1 | 0.001 | |||||||||||
| Bile acid biosynthesis | KEGG | 7 | 0.000 | 1 | 0.002 | |||||||||||
| Fatty acid metabolism | KEGG | 7 | 0.000 | 1 | 0.008 | |||||||||||
| Glycerolipid metabolism | KEGG | 7 | 0.000 | 1 | 0.008 | |||||||||||
| Methane metabolism | KEGG | 7 | 0.000 | 1 | 0.042 | |||||||||||
| Pyruvate metabolism | KEGG | 7 | 0.003 | 1 | 0.034 | |||||||||||
| Tyrosine metabolism | KEGG | 7 | 0.000 | 1 | 0.011 | |||||||||||
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP72C1, SHK1, SOB7 (At1g17060) | |||||||||||||||
| max. difference between log2-ratios: | 5.0 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.6 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to stress heatmap | ||||||||||
| calmodulin binding | TAIR-GO | 9 | 0.000 | 1 | 0.000 |
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| glutamate degradation I | AraCyc | 9 | 0.000 | 1 | 0.000 | |||||||||||
| Alanine and aspartate metabolism | KEGG | 9 | 0.000 | 1 | 0.004 | |||||||||||
| beta-Alanine metabolism | KEGG | 9 | 0.000 | 1 | 0.002 | |||||||||||
| Butanoate metabolism | KEGG | 9 | 0.000 | 1 | 0.003 | |||||||||||
| Glutamate metabolism | KEGG | 9 | 0.000 | 1 | 0.007 | |||||||||||
| Taurine and hypotaurine metabolism | KEGG | 9 | 0.000 | 1 | 0.000 | |||||||||||
| glycolysis and gluconeogenesis | FunCat | 8 | 0.000 | 2 | 0.001 | |||||||||||
| Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points) | CYP72C1, SHK1, SOB7 (At1g17060) | |||||||||||||||
| max. difference between log2-ratios: | 4.2 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.3 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| response to auxin stimulus | TAIR-GO | 14 | 0.000 | 2 | 0.000 |
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| plant / fungal specific systemic sensing and response | FunCat | 7 | 0.000 | 1 | 0.000 | |||||||||||
| plant hormonal regulation | FunCat | 7 | 0.000 | 1 | 0.000 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP72C1, SHK1, SOB7 (At1g17060) | |||||||||||||||
| max. difference between log2-ratios: | 5.1 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.2 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to mutants heatmap | ||||||||||
| IAA conjugate biosynthesis II | AraCyc | 9 | 0.000 | 1 | 0.000 |
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| page created by Juergen Ehlting | 06/28/06 | |||||||||||||||