Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP735A2 (At1g67110)	save all data as Tab Delimited Table
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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
There are no co-expressed patways common in all data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP735A2 (At1g67110)
max. difference between log2-ratios:				4.8
max. difference between log2-ratios excluding lowest and highest 5%:				3.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Cell Wall Carbohydrate Metabolism	BioPath	28	0.000	4	0.005
C-compound and carbohydrate metabolism	FunCat	18	0.000	3	0.032
Intermediary Carbon Metabolism	BioPath	12	0.000	2	0.018
allantoin degradation	AraCyc	12	0.000	2	0.000
isoleucine biosynthesis I	AraCyc	12	0.000	2	0.000
leucine biosynthesis	AraCyc	12	0.000	2	0.000
valine biosynthesis	AraCyc	12	0.000	2	0.000
fermentation	FunCat	12	0.000	2	0.000
Glycolysis / Gluconeogenesis	KEGG	12	0.000	2	0.008
GDP-carbohydrate biosynthesis	BioPath	10	0.000	1	0.001
de novo' GDP-L-fucose biosynthesis	TAIR-GO	10	0.000	1	0.000
growth	TAIR-GO	10	0.000	1	0.004
L-fucose biosynthesis	TAIR-GO	10	0.000	1	0.000
unidimensional cell growth	TAIR-GO	10	0.000	1	0.001
colanic acid building blocks biosynthesis	AraCyc	10	0.000	1	0.026
GDP-D-rhamnose biosynthesis	AraCyc	10	0.000	1	0.001
biogenesis of cell wall	FunCat	10	0.000	1	0.037
C-compound and carbohydrate utilization	FunCat	10	0.000	1	0.000
Fructose and mannose metabolism	KEGG	10	0.000	1	0.025
ascorbic acid biosynthesis	BioPath	8	0.000	1	0.003
ascorbate glutathione cycle	AraCyc	8	0.000	1	0.002
Ascorbate and aldarate metabolism	KEGG	8	0.000	1	0.008
response to osmotic stress	TAIR-GO	7	0.000	1	0.000
fatty acid biosynthesis -- initial steps	AraCyc	7	0.000	1	0.009
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP735A2 (At1g67110)
max. difference between log2-ratios:				5.9
max. difference between log2-ratios excluding lowest and highest 5%:				1.5
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
Cell Wall Carbohydrate Metabolism	BioPath	12	0.001	2	0.068
Methane metabolism	KEGG	12	0.000	4	0.000
Phenylalanine metabolism	KEGG	12	0.000	4	0.000
Prostaglandin and leukotriene metabolism	KEGG	12	0.000	4	0.000
Stilbene, coumarine and lignin biosynthesis	KEGG	12	0.000	4	0.000
GDP-carbohydrate biosynthesis	BioPath	10	0.000	1	0.000
Glucosyltransferases for benzoic acids	BioPath	10	0.000	1	0.001
Phenylpropanoid Metabolism	BioPath	10	0.000	1	0.090
colanic acid building blocks biosynthesis	AraCyc	10	0.000	1	0.014
dTDP-rhamnose biosynthesis	AraCyc	10	0.000	1	0.008
flavonol biosynthesis	AraCyc	10	0.000	1	0.002
galactose degradation I	AraCyc	10	0.000	1	0.000
glucose conversion	AraCyc	10	0.000	1	0.007
lactose degradation IV	AraCyc	10	0.000	1	0.000
UDP-glucose conversion	AraCyc	10	0.000	1	0.007
Fructose and mannose metabolism	KEGG	10	0.000	1	0.019
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP735A2 (At1g67110)
max. difference between log2-ratios:				4.3
max. difference between log2-ratios excluding lowest and highest 5%:				1.6
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
response to osmotic stress	TAIR-GO	7	0.000	1	0.000
fatty acid biosynthesis -- initial steps	AraCyc	7	0.000	1	0.001
Pathways co-expressed in the Mutant data set (with more than 29 annotation points)						CYP735A2 (At1g67110)
max. difference between log2-ratios:				9.2
max. difference between log2-ratios excluding lowest and highest 5%:				1.9
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Cell Wall Carbohydrate Metabolism	BioPath	195.5	0.000	60	0.000
C-compound and carbohydrate metabolism	FunCat	113	0.000	28	0.023
pectin metabolism	BioPath	90.5	0.000	41	0.000
Phenylpropanoid Metabolism	BioPath	88	0.013	15	0.611
Ribosome	KEGG	88	0.030	17	0.518
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria	BioPath	66	0.000	11	0.016
triterpene, sterol, and brassinosteroid metabolism	LitPath	56	0.021	11	0.141
Biosynthesis of prenyl diphosphates	BioPath	52	0.000	9	0.008
Nucleotide Metabolism	KEGG	51	0.000	10	0.016
Purine metabolism	KEGG	47	0.000	9	0.008
Lipid signaling	AcylLipid	43	0.014	9	0.330
Aromatic amino acid (Phe, Tyr, Trp) metabolism	BioPath	42	0.000	5	0.445
cellulose biosynthesis	BioPath	42	0.000	8	0.026
Starch and sucrose metabolism	KEGG	39	0.000	10	0.015
mono-/sesqui-/di-terpene biosynthesis	LitPath	38	0.000	8	0.012
terpenoid metabolism	LitPath	38	0.000	8	0.015
lactose degradation IV	AraCyc	37	0.000	8	0.000
biogenesis of cell wall	FunCat	36	0.000	12	0.001
nucleotide metabolism	FunCat	36	0.000	8	0.000
Biosynthesis of steroids	KEGG	36	0.000	6	0.040
Phenylalanine, tyrosine and tryptophan biosynthesis	KEGG	36	0.000	4	0.182
transport	FunCat	34	0.000	10	0.000
aromatic amino acid family biosynthesis	TAIR-GO	30	0.000	3	0.002
trans-zeatin biosynthesis	AraCyc	30	0.000	6	0.000
transport facilitation	FunCat	30	0.000	9	0.000
Translation factors	KEGG	30	0.001	9	0.078
page created by Alexandre OLRY	05/23/06