| Co-Expression Analysis of: | CYP76C1 (At2g45560) | Institut de Biologie Moléculaire des Plantes |
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| ________________________ | _____________________________________________ | CYPedia Home | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Organ and Tissue Data Set | view / save heatmap as: | OpenOffice table | annotation details for co-expressed genes can be found to the right of the heatmap | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| MS Excel table | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| save / view all data as: | Tab delimited Table | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) | magnitude of change [log2(sample / average)] | 0 | 0.3 | 0.6 | 0.9 | 1.2 | 1.5 | 1.8 | 2.1 | 2.4 | 2.7 | >2.99 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| greater than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| less than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Locus | r-value | Name | Description | suspension cell, aphidicolin, 0h ( 5) | suspension cell, aphidicolin, 2h (5) | suspension cell, aphidicolin, 4h (5) | suspension cell, aphidicolin, 6h (5) | suspension cell, aphidicolin, 8h (5) | suspension cell, aphidicolin, 10h (5) | suspension cell, aphidicolin, 12h (5) | suspension cell, aphidicolin, 14h (5) | suspension cell, aphidicolin, 16h (5) | suspension cell, aphidicolin, 19h (5) | suspension cell, sucrose, 0h (6) | suspension cell, sucrose, 2h (6) | suspension cell, sucrose, 4h (6) | suspension cell, sucrose, 6h (6) | suspension cell, sucrose, 8h (6) | suspension cell, sucrose, 10h (6) | suspension cell, sucrose, 12h (6) | suspension cell, 1d (19) | suspension cell, 1d (19) | suspension cell, 5d (19) | suspension cell, 7d (19) | suspension cell, senescing (20) | protoplast (62) | suspension cell, light (153) | suspension cell, dark (153) | callus, transdifferentiation A1 (78) | callus, transdifferentiation A2 (78) | callus, transdifferentiation A3 (78) | callus, transdifferentiation A4 (78) | callus, transdifferentiation A5 (78) | callus, transdifferentiation A6 (78) | seedling (59) | seedling (137) | seedling (138) | seedling (143) | seedling (144) | seedling, cont. light, 26h (149) | seedling, cont. light, 26h (149) | seedling, cont. light, 34h (149) | seedling, cont. light, 38h (149) | seedling, cont. light, 42h (149) | seedling, cont. light, 46h (149) | seedling, cont. light, 50h (149) | seedling, cont. light, 54h (149) | seedling, cont. light, 58h (149) | seedling, cont. light, 62h (149) | seedling, cont. light, 66h (149) | seedling, cont. light, 70h (149) | seedling, cont. light, 74h (149) | seedling, far red then white light (83) | seedling, dark then white light (83) | Cotyledon (87) | Hypocotyl (87) | Hypocotyl (139) | leaf, dedifferentiation A01 (50) | leaf, dedifferentiation A02 (50) | leaf, dedifferentiation A81 (50) | leaf, dedifferentiation A82 (50) | leaf, dedifferentiation A301 (50) | leaf, dedifferentiation A302 (50) | leaf, dedifferentiation A481 (50) | leaf, dedifferentiation A482 (50) | leaf, dedifferentiation B01 (50) | leaf, dedifferentiation B02 (50) | leaf, whole rosette, 0h (56) | leaf, whole rosette, 0h (56) | leaf, whole rosette, 2h (56) | leaf, whole rosette, 4h (56) | leaf, whole rosette, 8h (56) | leaf, whole rosette, 12h (56) | leaf, whole rosette, 13h (56) | leaf, whole rosette, 14h (56) | leaf, whole rosette, 16h (56) | leaf, whole rosette, 20h (56) | leaf, whole rosette, 24h (56) | leaf, whole rosette, 0h (56) | leaf, whole rosette, 4h (56) | leaf, whole rosette, 8h (56) | leaf, whole rosette, 12h (56) | leaf, whole rosette, 16h (56) | leaf, whole rosette, 20h (56) | leaf, mature, high light (68) | leaf, mature, low light (68) | leaf stage 7, petiol (88) | leaf stage 7, proximal half (88) | leaf stage 7, distal half (88) | guard cell enriched (11) | senescing leaf, Col5 (60) | senescing leaf, Col0 (60) | senescing leaf (88) | cauline leaf (88) | roots (87) | whole roots, A. halleri (101) | whole roots, A. petrea (101) | roots (141) | mature roots (23) | lateral roots (24) | lateral roots (29) | roots, axillary buds, dormant (30) | roots, axillary buds, active (30) | Roots, N03 depleted, dex treated (64) | Roots, N03 depleted (64) | root elongation zone (79) | stem (80) | stem (88) | stem, base (66) | stem, tip (66) | stem, 1st node (88) | stem, base, injured with needle (8) | shoot apex (87) | shoot apex (87) | shoot apex (88) | apical region, vegetative, Col (94) | apical region, reproductive, 3d, Col (94) | apical region, reproductive, 5d, Col (94) | apical region, reproductive, 7d, Col (94) | apical region, vegetative, Ler (94) | apical region, reproductive, 3d, Ler (94) | apical region, reproductive, 5d, Ler (94) | apical region, reproductive, 7d, Ler (94) | flower, stage 9 (89) | flower, stage 10 (89) | flower, stage 12 (89) | flower, stage 15 (89) | flower-silique, stage I (84) | flower-silique, stage II (84) | flower-silique, stage III (84) | flower bud, young (9) | flower bud, old (9) | flower (80) | flower (92) | flower (100) | sepal, stage 12 (89) | sepal, stage 15 (89) | petal, stage 12 (89) | petal, stage 15 (89) | stamen, stage 12 (89) | stamen, stage 15 (89) | carpel, stage 12 (89) | carpel, stage 15 (89) | pedicel, stage 15 (89) | pollen, uninucleate microspores (22) | pollen, bicellular (22) | pollen, tricellular (22) | pollen, mature (22) | pollen (74) | silique, young (136) | silique, old (136) | silique, stage 3 (90) | silique, stage 4 (90) | silique, stage 5 (90) | seed, stage 6 (90) | seed, stage 7 (90) | seed, stage 8 (90) | seed, stage 9 (90) | seed, stage 10 (90) | seed, dry (116) | seed, dry (117) | seed, fresh (96) | seed, dormant (96) | seed, imbibed, 1h (117) | seed, imbibed, 3h (117) | seed, imbibed, 22°C (118) | seed, imbibed, far red, 22°C (132) | seed, imbibed, 4°C (118) | seed, imbibed, far red, 4°C (132) | seed, imbibed (116) | Locus | Probeset | Name | Description | Annotation score | GO.keywords | FunCat keywords | AraCyc annotations | KEGG annotations | BioPath annotations | AcylLipid category | Literature annotations | Gene family | 90% quantile of DE | max. DE |
| At2g45560 | 1.000 | CYP76C1 | cytochrome P450 family protein | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | 0.4 | 1.8 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.3 | 0.7 | -0.7 | 1.8 | 2.1 | 1.4 | 1.2 | -0.9 | 0.7 | 1.9 | 2.1 | 1.6 | 1.3 | -0.9 | 0.8 | 2.3 | 1.5 | 0.5 | 1 | -0.9 | -0.9 | 0.7 | 1.5 | 0.4 | 1.1 | 0.4 | 0.3 | -0.1 | 0 | -0.9 | -0.9 | 1.3 | -0.1 | -0.5 | -0.2 | -0.1 | -0.9 | -0.9 | -0.9 | 0.7 | 2.3 | 1.2 | -0.7 | 0.3 | 1.6 | 0.7 | -0.7 | -0.5 | 1.6 | 1.4 | -0.1 | 0.2 | -0.1 | -0.9 | 0.2 | -0.9 | -0.5 | 0 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | 0.7 | -0.2 | -0.5 | -0.9 | -0.8 | -0.9 | -0.9 | -0.9 | -0.6 | -0.9 | -0.9 | -0.9 | -0.9 | 0 | 0.1 | 3 | 0.5 | 2.3 | -0.9 | -0.9 | -0.4 | 0.7 | -0.2 | -0.9 | 0.6 | 0.5 | 1 | 5.1 | 1.7 | 3.7 | -0.9 | 0 | 0.8 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | -0.9 | 0.1 | -0.4 | -0.9 | 0.9 | 1.7 | 2.1 | 2.3 | 3.9 | 3.9 | -0.9 | -0.9 | 3.8 | 3.5 | -0.9 | -0.9 | 0.4 | 0.5 | 1 | At2g45560 | 267505_at | CYP76C1 | cytochrome P450 family protein | 1 | terpenoid metabolism | monoterpene modulation | cytochrome P450 family, geraniol/nerol 10-hydroxylase (?) | 3.29 | 6.11 | ||||||
| At1g73880 | 0.664 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | -0.7 | -0.8 | 0.7 | 1.5 | -0.4 | -0.8 | -0.5 | -0.7 | -0.8 | -1 | 0.6 | 0.2 | 0.7 | -0.8 | 0 | 1 | 0.8 | 0.8 | 0.7 | 0.5 | 0.6 | 0.9 | 0.9 | 1.1 | 1 | 0.8 | 0.7 | 1 | 1.3 | 0.9 | 0 | -0.6 | -0.8 | 0.9 | 0.8 | -0.2 | 0.8 | 0.6 | 1.3 | 0.1 | 0.4 | 0.1 | 0 | 0.2 | 0.1 | 0.4 | 0 | 0.1 | -0.2 | 0.7 | 0.1 | -0.4 | 0.2 | -0.4 | -0.1 | -0.3 | -0.3 | -0.2 | 0.2 | -0.7 | 0.5 | 0.2 | 0 | -0.1 | -0.1 | -0.5 | 0.6 | 0 | 0.4 | 0.3 | -1.4 | -0.8 | -0.8 | -0.8 | -0.5 | 0.7 | -0.8 | -1.1 | 0.2 | -0.8 | -0.9 | -0.9 | -0.5 | -0.1 | -0.8 | -0.2 | 0 | 0.5 | 0 | -0.1 | -0.2 | -0.4 | -0.4 | 0.2 | 0 | -2.3 | -1.5 | -1.5 | -1.5 | -0.1 | 0.9 | 0.9 | 0.6 | -0.4 | -0.9 | -0.7 | -0.4 | 0.1 | 0.2 | 0.5 | -0.5 | 1 | 1.6 | 0.2 | 0.6 | 0 | 0.3 | 0.6 | 0.4 | 0 | -0.8 | -0.8 | -0.8 | -0.8 | -0.8 | 0.1 | 0.7 | 0.7 | 0.6 | 0.7 | 0 | -0.4 | 0.9 | 1 | 1.3 | 2.6 | 2.6 | 0 | 0.2 | 2.6 | 2.7 | -0.7 | -0.7 | 1 | 1.4 | 1.7 | At1g73880 | 260379_at | UDP-glucoronosyl/UDP-glucosyl transferase family protein | 10 | Phenylpropanoid Metabolism | Glucosyltransferases for benzoic acids | Glycosyl transferase, Family 1 | 2.27 | 5.14 | ||||||||
| At4g29010 | 0.636 | AIM1 | Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities; abnormal inflorescence meristem 1 / fatty acid multifunctional protein (AIM1) | -0.4 | -0.2 | -0.5 | -0.6 | -0.7 | -0.7 | -0.7 | -1 | -0.8 | -0.7 | 0 | -0.2 | -0.3 | -0.1 | -0.8 | -1.3 | -1.2 | -0.9 | -0.7 | -0.5 | -0.2 | 1.1 | -0.3 | -0.1 | -0.4 | 0 | -0.2 | 0 | 0.1 | 0 | 0 | -0.3 | 0.1 | -0.5 | 0 | 0.1 | 0 | 0.2 | 0.2 | 0.2 | 0 | 0.1 | 0.2 | 0.1 | 0.3 | 0.2 | 0 | 0 | 0.3 | -0.2 | -0.3 | 0.3 | 0 | 0.1 | 0.4 | 0.8 | -0.1 | 0 | 0.4 | 0.6 | 1.1 | 1.1 | 1.3 | 0.6 | 0.1 | -0.1 | 0 | -0.1 | -0.2 | -0.4 | -0.1 | -0.3 | -0.1 | 0.4 | 0.2 | -0.2 | 0 | 0.4 | 0 | -0.6 | -0.4 | -0.4 | -0.5 | 0 | -0.1 | 0 | -0.3 | 0.1 | 0.1 | 1.3 | 0.5 | -0.4 | -0.2 | -0.8 | -0.7 | -0.8 | -0.6 | -0.5 | -0.7 | -0.9 | 0 | -0.1 | -0.2 | -0.7 | 0.3 | -0.2 | -0.4 | 0 | 0.2 | -0.4 | -0.3 | -0.1 | -0.2 | -0.3 | -0.1 | -0.3 | -0.4 | 0 | -0.3 | -0.2 | -0.2 | -0.1 | 0.3 | 1.3 | 0 | 0.9 | -0.3 | -0.1 | 0.1 | -0.4 | 0 | -0.8 | 0.3 | 1.3 | 0.4 | 1.9 | 1.1 | 2.5 | 0.1 | 0.2 | 0 | -1 | -0.5 | -0.5 | -1.3 | -2.5 | 0 | 0.2 | 0 | 0.4 | 0.4 | 0.1 | 0.1 | 1 | 0.8 | 1.1 | 1.6 | 1.7 | 0.7 | -0.4 | 1.7 | 1.3 | 0.7 | 0.7 | 0.3 | 0.1 | 0.1 | At4g29010 | 253759_at | AIM1 | Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities; abnormal inflorescence meristem 1 / fatty acid multifunctional protein (AIM1) | 9 | enoyl-CoA hydratase activity | flower development | seed germination | oxidation of fatty acids | isoleucine degradation III | isoleucine degradation I | valine degradation II | valine degradation I | fatty acid oxidation pathway | Gluconeogenesis from lipids in seeds | fatty acid beta oxidation complex | Degradation of storage lipids and straight fatty acids | 2.18 | 5.06 | |||
| At3g46670 | 0.627 | UDP-glucoronosyl/UDP-glucosyl transferase family protein | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | 3 | 1.2 | -2 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | 1.5 | 0 | 1.8 | 1.1 | 0.2 | 0.9 | 0.4 | 1.3 | 1.1 | 1.4 | 1.2 | 1 | 0.5 | 1.2 | 1.5 | 1.3 | 1.2 | 1.3 | 2 | 2 | 1.2 | -2.1 | -0.7 | 0.7 | -1.3 | 2 | 3.4 | 1.5 | 0.4 | 1.9 | 1.9 | 2.2 | 0.8 | 1.6 | 1.1 | 0.5 | 1.3 | 1.3 | 0.4 | 0.7 | 1.9 | 2.1 | 1.7 | 1.9 | 0.6 | 2 | 1.8 | 2.1 | 1.3 | 1.3 | 2.9 | 2.7 | -0.4 | 0.5 | 0.2 | -1.7 | 0.5 | -0.2 | -1.5 | -0.1 | -2.1 | -0.6 | -1.3 | -2.1 | -2.1 | -2.1 | -2.1 | -0.4 | -0.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | -2.1 | 0 | -2.1 | -1.7 | 0.1 | -0.9 | -1.6 | -0.9 | -1 | -1.9 | -2.3 | 0.1 | -1.1 | -1.9 | -1 | 0.5 | 1.3 | 0.8 | 1.5 | 0.2 | 0.7 | 0.7 | 0.9 | 1.1 | 0 | 0.9 | 0.1 | 2.8 | 3.3 | -0.6 | 1 | 0 | 0.1 | -0.5 | 0.3 | -0.3 | -2.1 | -2.1 | -2.1 | -1.5 | -2.1 | 1.6 | 1.9 | 0.2 | 0.7 | 0.1 | -0.9 | -1 | 2.5 | 1.6 | 2.1 | 4.1 | 4.5 | 2.7 | 0.1 | 4.5 | 4 | 0.6 | 0.6 | 1.1 | 0.6 | 0.4 | At3g46670 | 252482_at | UDP-glucoronosyl/UDP-glucosyl transferase family protein | 1 | C-compound and carbohydrate metabolism | Glycosyl transferase, Family 1 | 4.99 | 6.87 | ||||||||
| At1g24490 | 0.625 | ARTEMIS | Encodes a protein located in chloroplast inner envelope membranes that is required for organelle division. ARTEMIS consists of three distinct modules: an N-terminal receptor-like region, a centrally positioned glycine-rich stretch containing a nucleoside | -1.1 | -1 | -0.4 | -0.8 | -1 | -1.1 | -0.9 | -0.7 | -0.9 | -0.9 | -0.2 | -0.9 | -0.5 | -0.5 | -0.2 | -0.4 | -0.4 | -0.8 | -0.4 | -0.4 | -0.7 | -1.1 | -1.4 | 1 | 0.4 | 0 | -0.2 | -0.3 | -0.4 | -0.3 | -0.2 | 0.3 | 0.1 | 0.8 | -0.8 | 0.5 | 0 | 0 | 0.1 | 0.1 | 0.2 | 0.5 | 0.2 | 0.1 | 0.4 | 0.2 | 0.2 | 0.3 | 0 | -0.3 | -0.2 | 0.3 | -0.3 | -1.5 | 0.5 | 0.7 | 1.3 | 1.7 | 0.3 | 0.2 | 1.2 | 0.7 | 0.8 | 0.1 | 0.4 | 0.1 | 0 | 0.2 | 0.5 | 0 | 0 | 0.2 | 0.5 | 0.3 | 0.5 | 0.1 | 0.6 | 0.5 | 0.4 | 0.2 | 0.1 | -0.1 | -0.2 | -0.1 | 0 | 0 | -0.9 | 0.9 | 0.7 | 1.4 | 0.9 | -0.6 | -1.3 | -1.9 | -0.9 | -0.6 | -0.6 | -1.1 | -0.1 | 0.1 | -1.7 | -1.8 | -0.7 | -0.7 | -0.2 | -0.4 | -0.4 | -0.4 | 0 | 0.7 | 0.5 | 0.2 | 0.2 | 0.3 | 0.4 | 0 | -0.7 | -0.8 | -1 | -0.7 | 0.2 | 0.2 | 0.1 | 0.5 | -0.8 | -0.5 | -0.8 | -0.7 | -0.5 | 0.1 | 0.2 | 0 | 0.6 | 1.2 | 0.1 | 0.9 | 0 | 0.3 | 0.1 | 0.4 | 0 | -0.2 | -0.1 | -0.8 | -1.2 | -1.9 | 0 | -0.4 | -0.7 | 0 | -0.3 | -0.3 | 0 | 1.6 | 1.9 | 2.3 | 2.8 | 3 | 0.5 | 0 | 2.8 | 3.1 | -0.4 | -0.4 | 0.5 | 0.6 | 1.3 | At1g24490 | 265011_at | ARTEMIS | Encodes a protein located in chloroplast inner envelope membranes that is required for organelle division. ARTEMIS consists of three distinct modules: an N-terminal receptor-like region, a centrally positioned glycine-rich stretch containing a nucleoside | 6 | chloroplast division | Folding, Sorting and Degradation | Protein export | 2.57 | 5.08 | ||||||
| page created by Juergen Ehlting | 03/06/06 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||