Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP76C7 (At3g61040)	save all data as Tab Delimited Table
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Pathways co-expressed in the 3 applicable data sets (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
secondary metabolism	TAIR-GO	30	5
Transcription	KEGG	29	6
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)						CYP76C7 (At3g61040)
max. difference between log2-ratios:				7,8
max. difference between log2-ratios excluding lowest and highest 5%:				2,4
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Synthesis and storage of oil	AcylLipid	38	0,000	10	0,000
Miscellaneous acyl lipid metabolism	AcylLipid	29	0,002	7	0,446
glycolysis and gluconeogenesis	FunCat	28	0,000	6	0,008
Biosynthesis of Amino Acids and Derivatives	BioPath	26	0,000	4	0,032
C-compound and carbohydrate metabolism	FunCat	26	0,025	9	0,033
amino acid metabolism	FunCat	20	0,001	2	0,337
Phenylpropanoid pathway	LitPath	20	0,000	5	0,001
acyl-CoA binding	TAIR-GO	19	0,000	2	0,000
lipid transport	TAIR-GO	19	0,000	2	0,000
Pyruvate metabolism	KEGG	18	0,000	3	0,011
Intermediary Carbon Metabolism	BioPath	16	0,000	3	0,089
Phenylpropanoid Metabolism	BioPath	15	0,007	3	0,114
core phenylpropanoid metabolism	BioPath	14	0,000	2	0,012
lignin biosynthesis	AraCyc	12	0,000	2	0,035
TCA cycle variation VII	AraCyc	12	0,001	2	0,108
Pathways co-expressed in the Stress data set ( with more than 10 annotation points)						CYP76C7 (At3g61040)
max. difference between log2-ratios:				2,1
max. difference between log2-ratios excluding lowest and highest 5%:				0,0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to stress heatmap
Cell Wall Carbohydrate Metabolism	BioPath	30	0,000	9	0,003
C-compound and carbohydrate metabolism	FunCat	24	0,001	6	0,032
nucleotide metabolism	FunCat	16	0,000	4	0,000
UDP-carbohydrate metabolism	BioPath	14	0,000	2	0,002
(deoxy)ribose phosphate degradation	AraCyc	14	0,000	3	0,000
pyrimidine nucleotide metabolism	FunCat	14	0,000	3	0,000
Nucleotide Metabolism	KEGG	14	0,000	3	0,005
Pyrimidine metabolism	KEGG	14	0,000	3	0,000
Streptomycin biosynthesis	KEGG	14	0,000	2	0,000
Phenylpropanoid Metabolism	BioPath	13	0,006	4	0,047
pectin metabolism	BioPath	12	0,000	5	0,006
secondary metabolism	FunCat	11	0,000	2	0,033
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP76C7 (At3g61040)
max. difference between log2-ratios:				2,2
max. difference between log2-ratios excluding lowest and highest 5%:				1,4
						Link to hormones etc. heatmap
there are no co-expressed pathways with r-value greater than 0.5 in this data set
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP76C7 (At3g61040)
max. difference between log2-ratios:				6,5
max. difference between log2-ratios excluding lowest and highest 5%:				0,9
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Synthesis and storage of oil	AcylLipid	16	0,000	5	0,000
Transcription	KEGG	13	0,000	2	0,002
secondary metabolism	FunCat	12	0,000	2	0,009
gibberellic acid biosynthesis	TAIR-GO	10	0,000	1	0,001
gibberellin biosynthesis	AraCyc	10	0,000	1	0,002
plant / fungal specific systemic sensing and response	FunCat	10	0,000	1	0,008
plant hormonal regulation	FunCat	10	0,000	1	0,008
Diterpenoid biosynthesis	KEGG	10	0,000	1	0,001
Gibberellin metabolism	LitPath	10	0,000	1	0,003
giberelin biosynthesis	LitPath	10	0,000	1	0,002
DNA-directed RNA polymerase II, core complex	TAIR-GO	9	0,000	1	0,000
transcription from RNA polymerase II promoter	TAIR-GO	9	0,000	1	0,000
RNA polymerase	KEGG	9	0,000	1	0,007
Carbon fixation	KEGG	8	0,000	2	0,001
transport	FunCat	7	0,000	1	0,000
transport ATPases	FunCat	7	0,000	1	0,023
transport facilitation	FunCat	7	0,000	1	0,000
Oxidative phosphorylation	KEGG	7	0,000	1	0,024
page created by Juergen Ehlting	08/03/06