Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP78A10 (At1g74110) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.

















there are co-expressed pathways in only 1 data set

































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP78A10 (At1g74110)







max. difference between log2-ratios: 0.0











max. difference between log2-ratios excluding lowest and highest 5%: 0.0

























this gene is not expressed to detectable levels in any experiment





























































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP78A10 (At1g74110)







max. difference between log2-ratios: 6.2











max. difference between log2-ratios excluding lowest and highest 5%: 3.0

















Link to stress heatmap






there are no genes co-expressed with more than 6 annotation points








































Pathways co-expressed in the Hormone etc. data set (with more than 12 annotation points)
CYP78A10 (At1g74110)







max. difference between log2-ratios: 4.0











max. difference between log2-ratios excluding lowest and highest 5%: 0.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Lipid signaling AcylLipid 48 0.000 13 0.004





Inositol phosphate metabolism KEGG 46 0.000 14 0.000




Biosynthesis of Amino Acids and Derivatives BioPath 42 0.002 8 0.024




Leaf Glycerolipid Biosynthesis BioPath 42 0.015 7 0.074




Benzoate degradation via CoA ligation KEGG 42 0.000 13 0.000




Nicotinate and nicotinamide metabolism KEGG 42 0.000 13 0.000




Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 40 0.000 4 0.059




secondary metabolism FunCat 36 0.000 7 0.000




Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 34 0.000 6 0.000




Chlorophyll biosynthesis and breakdown BioPath 30 0.000 3 0.009




Leaf Glycerolipid Biosynthesis in Plastid BioPath 30 0.000 3 0.056




Propanoate metabolism KEGG 30 0.000 5 0.001




Synthesis of membrane lipids in plastids AcylLipid 30 0.000 3 0.018




chlorophyll and phytochromobilin metabolism LitPath 30 0.000 3 0.028










triacylglycerol degradation AraCyc 29.5 0.000 8 0.000










Phenylpropanoid pathway LitPath 28 0.001 5 0.059










Glycerolipid metabolism KEGG 26 0.000 3 0.033










Glycan Biosynthesis and Metabolism KEGG 25 0.000 7 0.002










ethylene biosynthesis TAIR-GO 24 0.000 4 0.000










biosynthesis of proto- and siroheme AraCyc 24 0.000 3 0.024










cellulose biosynthesis BioPath 20 0.000 3 0.027










cellular response to phosphate starvation TAIR-GO 20 0.000 2 0.002










galactolipid biosynthesis TAIR-GO 20 0.000 2 0.000










lipid biosynthesis TAIR-GO 20 0.000 2 0.000










glycosylglyceride biosynthesis AraCyc 20 0.000 2 0.001










Fructose and mannose metabolism KEGG 20 0.000 3 0.090










Ion channels KEGG 20 0.000 10 0.000










Ligand-Receptor Interaction KEGG 20 0.000 10 0.000










Porphyrin and chlorophyll metabolism KEGG 20 0.000 2 0.077










phytochromobilin biosynthesis LitPath 20 0.000 2 0.001










systemic acquired resistance TAIR-GO 19.5 0.000 3 0.000










intracellular signalling FunCat 19 0.000 5 0.003










defense response TAIR-GO 16.5 0.000 3 0.005










hemicellulose biosynthesis BioPath 16 0.000 2 0.007










fructose degradation (anaerobic) AraCyc 16 0.000 4 0.027










lignin biosynthesis AraCyc 16 0.000 4 0.006










phospholipid biosynthesis II AraCyc 16 0.000 3 0.003










sorbitol fermentation AraCyc 16 0.001 4 0.032










plant / fungal specific systemic sensing and response FunCat 16 0.000 4 0.000










plant hormonal regulation FunCat 16 0.000 4 0.000










de novo biosynthesis of purine nucleotides I AraCyc 15 0.005 4 0.085










lipases pathway AraCyc 15 0.000 3 0.005










Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 14 0.027 2 0.166










core phenylpropanoid metabolism BioPath 14 0.009 2 0.107










chlorophyll biosynthesis AraCyc 14 0.003 2 0.165










biogenesis of chloroplast FunCat 14 0.019 2 0.216










lipid, fatty acid and isoprenoid degradation FunCat 14 0.000 2 0.033










Glycerophospholipid metabolism KEGG 14 0.000 2 0.052










defense response to pathogenic bacteria, incompatible interaction TAIR-GO 12.5 0.000 2 0.000










response to pathogenic bacteria TAIR-GO 12.5 0.000 2 0.000





























































Pathways co-expressed in the Mutant data set (with more than 10 annotation points)
CYP78A10 (At1g74110)







max. difference between log2-ratios: 0.0











max. difference between log2-ratios excluding lowest and highest 5%: 0.0

























this gene is not expressed to detectable levels in any experiment












































page created by Juergen Ehlting 04/24/06