Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP78A8 (At1g01190)	save all data as Tab Delimited Table
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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no co-expressed pathways in all 3 data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP78A8 (At1g01190)
max. difference between log2-ratios:				5.4
max. difference between log2-ratios excluding lowest and highest 5%:				2.2
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
mono-/sesqui-/di-terpene biosynthesis	LitPath	18	0.000	3	0.000
terpenoid metabolism	LitPath	18	0.000	3	0.000
sequiterpene biosynthesis	LitPath	10	0.000	1	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP78A8 (At1g01190)
max. difference between log2-ratios:				5.4
max. difference between log2-ratios excluding lowest and highest 5%:				1.5
						Link to stress heatmap
there are no co-expressed genes with more than 6 annotation points
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP78A8 (At1g01190)
max. difference between log2-ratios:				2.4
max. difference between log2-ratios excluding lowest and highest 5%:				0.3
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Biosynthesis of prenyl diphosphates	BioPath	10	0.000	1	0.000
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria	BioPath	10	0.000	1	0.001
dolichol biosynthesis	TAIR-GO	10	0.000	1	0.000
polyprenyl diphosphate biosynthesis	LitPath	10	0.000	1	0.000
cytokinin catabolism	TAIR-GO	9	0.000	1	0.000
cytokinins degradation	AraCyc	9	0.000	1	0.000
Pathways co-expressed in the Mutant data set (with more than 10 annotation points)						CYP78A8 (At1g01190)
max. difference between log2-ratios:				5.7
max. difference between log2-ratios excluding lowest and highest 5%:				0.2
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Cell Wall Carbohydrate Metabolism	BioPath	71	0.000	25	0.000
C-compound and carbohydrate metabolism	FunCat	48	0.001	11	0.094
pectin metabolism	BioPath	44	0.000	20	0.000
Phenylpropanoid Metabolism	BioPath	32	0.001	7	0.208
Intermediary Carbon Metabolism	BioPath	28	0.001	6	0.263
Ribosome	KEGG	28	0.007	5	0.279
triterpene, sterol, and brassinosteroid metabolism	LitPath	21	0.020	6	0.041
Nucleotide Metabolism	KEGG	18	0.000	4	0.010
Pyrimidine metabolism	KEGG	18	0.000	4	0.001
Lipid signaling	AcylLipid	18	0.000	4	0.154
mono-/sesqui-/di-terpene biosynthesis	LitPath	18	0.000	3	0.063
terpenoid metabolism	LitPath	18	0.000	3	0.069
transcription	FunCat	17	0.000	4	0.000
glycolysis IV	AraCyc	16	0.000	5	0.007
nucleotide metabolism	FunCat	16	0.000	4	0.000
RNA synthesis	FunCat	15	0.000	3	0.008
jasmonic acid biosynthesis	TAIR-GO	14	0.000	2	0.001
(deoxy)ribose phosphate degradation	AraCyc	14	0.000	3	0.000
acetate fermentation	AraCyc	14	0.003	4	0.037
fructose degradation (anaerobic)	AraCyc	14	0.002	4	0.028
glycerol degradation II	AraCyc	14	0.000	4	0.007
jasmonic acid biosynthesis	AraCyc	14	0.000	2	0.012
non-phosphorylated glucose degradation	AraCyc	14	0.000	4	0.002
sorbitol fermentation	AraCyc	14	0.003	4	0.033
pyrimidine nucleotide metabolism	FunCat	14	0.000	3	0.001
cell growth / morphogenesis	FunCat	13	0.000	2	0.000
Flavonoid and anthocyanin metabolism	BioPath	12	0.000	3	0.107
abscisic acid biosynthesis	AraCyc	12	0.000	2	0.000
lipases pathway	AraCyc	12	0.000	2	0.033
mixed acid fermentation	AraCyc	12	0.000	3	0.014
biogenesis of cell wall	FunCat	12	0.018	5	0.012
Carbon fixation	KEGG	12	0.001	3	0.026
Glycolysis / Gluconeogenesis	KEGG	12	0.003	3	0.044
Purine metabolism	KEGG	12	0.000	3	0.020
Pyruvate metabolism	KEGG	12	0.003	3	0.036
abscisic acid biosynthesis	LitPath	12	0.000	2	0.005
Carotenoid and abscisic acid metabolism	LitPath	12	0.003	2	0.082
starch biosynthesis	AraCyc	11	0.000	2	0.000
Starch and sucrose metabolism	KEGG	11	0.010	2	0.142
page created by Juergen Ehlting	04/24/06