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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| jasmonic acid biosynthesis |
AraCyc |
30 |
3 |
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| amino acid metabolism |
FunCat |
29 |
5 |
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| Lipid signaling |
AcylLipid |
26 |
3 |
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| Arginine and proline metabolism |
KEGG |
21 |
3 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| Urea cycle and metabolism of amino groups |
KEGG |
21 |
3 |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Hormone etc. data set (with more than 9 annotation points) |
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CYP81F1 (At4g37430) |
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| max. difference between log2-ratios: |
4.5 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
1.5 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
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| Biosynthesis of Amino Acids and Derivatives |
BioPath |
28 |
0.000 |
6 |
0.001 |
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| Phenylpropanoid Metabolism |
BioPath |
25 |
0.000 |
5 |
0.005 |
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| tryptophan biosynthesis |
AraCyc |
22 |
0.000 |
3 |
0.000 |
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| Aromatic amino acid (Phe, Tyr, Trp) metabolism |
BioPath |
20 |
0.000 |
2 |
0.016 |
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| tryptophan biosynthesis |
TAIR-GO |
20 |
0.000 |
2 |
0.000 |
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| amino acid metabolism |
FunCat |
20 |
0.000 |
4 |
0.000 |
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| Phenylalanine, tyrosine and tryptophan biosynthesis |
KEGG |
20 |
0.000 |
2 |
0.001 |
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| Shikimate pathway |
LitPath |
20 |
0.000 |
2 |
0.003 |
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| Trp biosyntesis |
LitPath |
20 |
0.000 |
2 |
0.000 |
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| assimilation of ammonia, metabolism of the glutamate group |
FunCat |
14 |
0.000 |
2 |
0.000 |
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| cysteine biosynthesis I |
AraCyc |
13 |
0.000 |
2 |
0.002 |
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| Arginine and proline metabolism |
KEGG |
12 |
0.000 |
2 |
0.001 |
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| Urea cycle and metabolism of amino groups |
KEGG |
12 |
0.000 |
2 |
0.000 |
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| Glutamate/glutamine from nitrogen fixation |
BioPath |
10 |
0.000 |
1 |
0.007 |
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| Leaf Glycerolipid Biosynthesis in cytosol / ER |
BioPath |
10 |
0.000 |
1 |
0.034 |
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| jasmonic acid biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.008 |
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| response to wounding |
TAIR-GO |
10 |
0.000 |
1 |
0.010 |
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| jasmonic acid biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.006 |
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| nitrogen and sulfur utilization |
FunCat |
10 |
0.000 |
1 |
0.002 |
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| stress response |
FunCat |
10 |
0.000 |
2 |
0.000 |
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| D-Glutamine and D-glutamate metabolism |
KEGG |
10 |
0.000 |
1 |
0.000 |
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| Glutamate metabolism |
KEGG |
10 |
0.000 |
1 |
0.022 |
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| Nitrogen metabolism |
KEGG |
10 |
0.000 |
1 |
0.012 |
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| Lipid signaling |
AcylLipid |
10 |
0.005 |
1 |
0.155 |
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| Synthesis of membrane lipids in endomembrane system |
AcylLipid |
10 |
0.000 |
1 |
0.026 |
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