Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP81F3 (At4g37400)	save all data as Tab Delimited Table
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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
there are no co-expressed pathways common in the 3 data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP81F3 (At4g37400)
max. difference between log2-ratios:				4.4
max. difference between log2-ratios excluding lowest and highest 5%:				2.5
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Cell Wall Carbohydrate Metabolism	BioPath	22	0.000	4	0.023
GDP-carbohydrate biosynthesis	BioPath	10	0.000	1	0.001
colanic acid building blocks biosynthesis	AraCyc	10	0.000	1	0.008
dTDP-rhamnose biosynthesis	AraCyc	10	0.000	1	0.005
galactose degradation I	AraCyc	10	0.000	1	0.000
glucose conversion	AraCyc	10	0.000	1	0.004
lactose degradation IV	AraCyc	10	0.000	1	0.000
UDP-glucose conversion	AraCyc	10	0.000	1	0.004
Fructose and mannose metabolism	KEGG	10	0.000	1	0.003
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP81F3 (At4g37400)
max. difference between log2-ratios:				5.9
max. difference between log2-ratios excluding lowest and highest 5%:				1.7
						Link to stress heatmap
there are no co-expressed genes with r>0.5
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP81F3 (At4g37400)
max. difference between log2-ratios:				2.6
max. difference between log2-ratios excluding lowest and highest 5%:				1.7
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
tryptophan catabolism	TAIR-GO	10	0.000	1	0.000
glucosinolate biosynthesis from tryptophan	AraCyc	10	0.000	1	0.000
IAA biosynthesis	AraCyc	10	0.000	1	0.000
IAA biosynthesis I	AraCyc	10	0.000	1	0.000
Ascorbate and aldarate metabolism	KEGG	10	0.000	1	0.000
Fluorene degradation	KEGG	10	0.000	1	0.000
gamma-Hexachlorocyclohexane degradation	KEGG	10	0.000	1	0.000
Stilbene, coumarine and lignin biosynthesis	KEGG	10	0.000	1	0.004
Glucosinolate Metabolism	LitPath	10	0.000	1	0.000
Pathways co-expressed in the Mutant data set (with more than 20 annotation points)						CYP81F3 (At4g37400)
max. difference between log2-ratios:				5.5
max. difference between log2-ratios excluding lowest and highest 5%:				1.7
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
Phenylpropanoid Metabolism	BioPath	74	0.000	11	0.000
Aromatic amino acid (Phe, Tyr, Trp) metabolism	BioPath	48	0.000	7	0.000
Shikimate pathway	LitPath	48	0.000	7	0.000
tryptophan biosynthesis	AraCyc	46	0.000	7	0.000
Phenylpropanoid pathway	LitPath	46	0.000	8	0.005
tryptophan biosynthesis	TAIR-GO	44	0.000	6	0.000
Trp biosyntesis	LitPath	44	0.000	6	0.000
Biosynthesis of Amino Acids and Derivatives	BioPath	38	0.000	5	0.126
response to pathogenic bacteria	TAIR-GO	34	0.000	5	0.000
lignin biosynthesis	AraCyc	30	0.000	5	0.000
core phenylpropanoid metabolism	BioPath	26	0.000	4	0.002
Methionin/SAM/ethylene metabolism from cysteine and aspartate	BioPath	26	0.000	3	0.003
Lipid signaling	AcylLipid	26	0.000	7	0.053
Benzoate degradation via CoA ligation	KEGG	24	0.000	5	0.014
Inositol phosphate metabolism	KEGG	24	0.000	5	0.020
Nicotinate and nicotinamide metabolism	KEGG	24	0.000	5	0.009
Stilbene, coumarine and lignin biosynthesis	KEGG	23	0.000	4	0.069
Phenylalanine, tyrosine and tryptophan biosynthesis	KEGG	22	0.000	3	0.015
Propanoate metabolism	KEGG	22	0.000	3	0.004
page created by Juergen Ehlting	06/27/06