Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP81F4 (At4g37410) save all data as Tab Delimited Table










_________________________________________














Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.





Pathway Source Sum of scores Sum of genes






Glucosinolate Metabolism LitPath 50 5






lactose degradation IV AraCyc 45 10


























To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.






































For more information on how these pathway maps were generated please read the methods page






















































Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)
CYP81F4 (At4g37410)







max. difference between log2-ratios: 8.3











max. difference between log2-ratios excluding lowest and highest 5%: 7.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Stilbene, coumarine and lignin biosynthesis KEGG 26 0.000 9 0.000


Miscellaneous acyl lipid metabolism AcylLipid 20 0.000 7 0.002

monoterpenoid biosynthesis TAIR-GO 19 0.000 2 0.000

mono-/sesqui-/di-terpene biosynthesis LitPath 19 0.000 2 0.051

monoterpene biosynthesis LitPath 19 0.000 2 0.000

terpenoid metabolism LitPath 19 0.000 2 0.055

Phenylpropanoid Metabolism BioPath 18 0.000 4 0.001

triterpene, sterol, and brassinosteroid metabolism LitPath 17 0.015 4 0.031

detoxification FunCat 16 0.000 5 0.000

Methane metabolism KEGG 16 0.000 8 0.000

Phenylalanine metabolism KEGG 16 0.000 8 0.000

Prostaglandin and leukotriene metabolism KEGG 16 0.000 8 0.000

isoprenoid biosynthesis FunCat 14 0.000 3 0.001

lipid, fatty acid and isoprenoid biosynthesis FunCat 14 0.000 3 0.000










Biosynthesis of steroids KEGG 13 0.000 2 0.010










triterpene biosynthesis LitPath 13 0.000 2 0.002










detoxification involving cytochrome P450 FunCat 12 0.000 3 0.000










secondary metabolism FunCat 11 0.000 4 0.000












































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP81F4 (At4g37410)







max. difference between log2-ratios: 9.1











max. difference between log2-ratios excluding lowest and highest 5%: 3.5

















Link to stress heatmap






there are no co-expressed genes with








































Pathways co-expressed in the Hormone etc. data set (with more than 20 annotation points)
CYP81F4 (At4g37410)







max. difference between log2-ratios: 5.9











max. difference between log2-ratios excluding lowest and highest 5%: 2.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Intermediary Carbon Metabolism BioPath 56 0.000 10 0.007





Biosynthesis of Amino Acids and Derivatives BioPath 50 0.000 8 0.059




C-compound and carbohydrate metabolism FunCat 46.5 0.027 11 0.047




amino acid metabolism FunCat 36 0.000 5 0.057




tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) FunCat 30 0.000 6 0.018




Glucosinolate Metabolism LitPath 30 0.000 3 0.001




glycolysis and gluconeogenesis FunCat 28.5 0.003 6 0.037




Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 28 0.006 4 0.103




formaldehyde assimilation I (serine pathway) AraCyc 28 0.000 4 0.017




serine-isocitrate lyase pathway AraCyc 28 0.000 4 0.056




TCA cycle -- aerobic respiration AraCyc 28 0.000 5 0.021




TCA cycle variation IV AraCyc 28 0.000 5 0.017




TCA cycle variation VII AraCyc 28 0.016 5 0.106










TCA cycle variation VIII AraCyc 28 0.000 5 0.025










Citrate cycle (TCA cycle) KEGG 28 0.000 5 0.001










Gluconeogenesis from lipids in seeds BioPath 26 0.000 6 0.004










gluconeogenesis AraCyc 26 0.000 4 0.056










phenylalanine degradation I AraCyc 26 0.000 3 0.035










acetate fermentation AraCyc 25 0.006 4 0.209










fructose degradation (anaerobic) AraCyc 25 0.003 4 0.168










glycolysis IV AraCyc 25 0.003 4 0.176










sorbitol fermentation AraCyc 25 0.007 4 0.192










acetyl-CoA assimilation AraCyc 24 0.000 4 0.015










mixed acid fermentation AraCyc 24 0.000 4 0.022










Methionine metabolism KEGG 22 0.000 4 0.000





























































Pathways co-expressed in the Mutant data set (with more than 40 annotation points)
CYP81F4 (At4g37410)







max. difference between log2-ratios: 7.1











max. difference between log2-ratios excluding lowest and highest 5%: 4.0











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Photosystems BioPath 316 0.000 44 0.000



additional photosystem II components BioPath 140 0.000 17 0.000


Chlorophyll a/b binding proteins BioPath 120 0.000 15 0.000


C-compound and carbohydrate metabolism FunCat 119 0.000 16 0.073


Photosystem I BioPath 116 0.000 19 0.000


glycolysis and gluconeogenesis FunCat 109 0.000 14 0.000


Intermediary Carbon Metabolism BioPath 108 0.000 15 0.198


Photosynthesis KEGG 106 0.000 16 0.000


biogenesis of chloroplast FunCat 85 0.000 13 0.000


photosynthesis FunCat 85 0.000 11 0.000


Carbon fixation KEGG 73 0.000 10 0.000


Photosystem II BioPath 68 0.000 9 0.001


transport FunCat 66 0.000 9 0.000










chlorophyll binding TAIR-GO 58 0.000 7 0.000










photosystem I TAIR-GO 58 0.000 7 0.000










acetate fermentation AraCyc 58 0.000 9 0.001










fructose degradation (anaerobic) AraCyc 58 0.000 9 0.001










glycolysis I AraCyc 58 0.000 9 0.077










glycolysis IV AraCyc 58 0.000 9 0.001










sorbitol fermentation AraCyc 58 0.000 9 0.001










Gluconeogenesis from lipids in seeds BioPath 54 0.002 8 0.095










gluconeogenesis AraCyc 54 0.000 8 0.000










Glycolysis / Gluconeogenesis KEGG 54 0.000 8 0.002










photosystem II TAIR-GO 50 0.000 6 0.000










glycerol degradation II AraCyc 48 0.000 7 0.001










respiration FunCat 44 0.000 6 0.000










photosynthesis TAIR-GO 42 0.000 6 0.000










Calvin cycle AraCyc 42 0.000 6 0.002










glyceraldehyde 3-phosphate degradation AraCyc 42 0.000 6 0.000



























page created by Juergen Ehlting 06/27/06