Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP83A1 (At4g13770) save all data as Tab Delimited Table










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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.





Pathway Source Sum of scores Sum of genes






Glucosinolate Metabolism LitPath 330 33






Branched-chain amino acids from aspartate BioPath 216 34








leucine biosynthesis AraCyc 196 30








glucosinolate biosynthesis TAIR-GO 170 17
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.







leucine biosynthesis TAIR-GO 166 25








Valine, leucine and isoleucine biosynthesis KEGG 162 23








glucosinolate biosynthesis from homomethionine AraCyc 130 13
For more information on how these pathway maps were generated please read the methods page







gamma-Hexachlorocyclohexane degradation KEGG 58 7








response to UV TAIR-GO 50 5












glucosinolate biosynthesis from phenylalanine AraCyc 50 5












cellulose biosynthesis TAIR-GO 49 8












homomethionine biosynthesis AraCyc 40 4














































Pathways co-expressed in the Organ and Tissue data set (with more than 39 annotation points)
CYP83A1 (At4g13770)







max. difference between log2-ratios: 7.9











max. difference between log2-ratios excluding lowest and highest 5%: 7.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






Photosystems BioPath 385 0.000 57 0.000


Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 185 0.000 22 0.001

additional photosystem II components BioPath 158 0.000 22 0.000

C-compound and carbohydrate metabolism FunCat 154 0.000 27 0.044

photosynthesis FunCat 154 0.000 24 0.000

biogenesis of chloroplast FunCat 149 0.000 22 0.000

Photosynthesis KEGG 149 0.000 26 0.000

Photosystem I BioPath 141 0.000 23 0.000

Chlorophyll a/b binding proteins BioPath 138 0.000 17 0.000

Glucosinolate Metabolism LitPath 130 0.000 13 0.000

glycolysis and gluconeogenesis FunCat 119 0.000 19 0.000

Carbon fixation KEGG 110 0.000 16 0.000

Chlorophyll biosynthesis and breakdown BioPath 101 0.000 12 0.000

chlorophyll and phytochromobilin metabolism LitPath 95 0.000 11 0.000










Porphyrin and chlorophyll metabolism KEGG 91 0.000 11 0.000










transport FunCat 84 0.000 14 0.000










chlorophyll biosynthesis AraCyc 80 0.000 11 0.004










photosystem I TAIR-GO 77 0.000 9 0.000










Calvin cycle AraCyc 76 0.000 12 0.000










Photosystem II BioPath 73 0.000 10 0.015










chlorophyll binding TAIR-GO 70 0.000 8 0.000










chlorophyll biosynthesis TAIR-GO 65 0.000 7 0.000










sulfate assimilation III AraCyc 65 0.000 7 0.012










acetate fermentation AraCyc 62 0.000 11 0.030










fructose degradation (anaerobic) AraCyc 60 0.000 10 0.040










glycolysis IV AraCyc 60 0.000 10 0.044










sorbitol fermentation AraCyc 60 0.000 10 0.053










Selenoamino acid metabolism KEGG 60 0.000 6 0.002










Sulfur metabolism KEGG 60 0.000 6 0.000










Glycolysis / Gluconeogenesis KEGG 58 0.000 9 0.015










Biosynthesis of steroids KEGG 54 0.000 6 0.018










Pentose phosphate pathway KEGG 54 0.000 8 0.001










gluconeogenesis AraCyc 52 0.000 8 0.028










photorespiration AraCyc 52 0.000 11 0.000










photosystem II TAIR-GO 51 0.000 6 0.000










glucosinolate biosynthesis TAIR-GO 50 0.000 5 0.000










chlorophyll biosynthesis LitPath 49 0.000 5 0.000










light harvesting complex BioPath 48 0.000 6 0.000










Branched-chain amino acids from aspartate BioPath 46 0.000 7 0.017










transport facilitation FunCat 46 0.000 8 0.000










photosynthesis TAIR-GO 44 0.000 6 0.004










energy FunCat 44 0.000 6 0.000










respiration FunCat 44 0.000 6 0.000










glucosinolate biosynthesis from homomethionine AraCyc 40 0.000 4 0.000










leucine biosynthesis AraCyc 40 0.000 6 0.000










aerobic respiration FunCat 40 0.000 5 0.001












































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP83A1 (At4g13770)







max. difference between log2-ratios: 10.2











max. difference between log2-ratios excluding lowest and highest 5%: 3.2











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap






Biosynthesis of Amino Acids and Derivatives BioPath 80 0.000 12 0.000
Glucosinolate Metabolism LitPath 60 0.000 6 0.000
Branched-chain amino acids from aspartate BioPath 58 0.000 9 0.000
leucine biosynthesis AraCyc 42 0.000 7 0.000
Valine, leucine and isoleucine biosynthesis KEGG 42 0.000 6 0.000
glucosinolate biosynthesis TAIR-GO 40 0.000 4 0.000
glucosinolate biosynthesis from homomethionine AraCyc 30 0.000 3 0.000
amino acid metabolism FunCat 30 0.000 4 0.001
Pyruvate metabolism KEGG 30 0.000 3 0.017
TCA cycle -- aerobic respiration AraCyc 24 0.000 4 0.002
TCA cycle variation VII AraCyc 24 0.000 4 0.011
TCA cycle variation VIII AraCyc 24 0.000 4 0.002
TCA cycle variation IV AraCyc 22 0.000 3 0.011










C-compound and carbohydrate metabolism FunCat 22 0.000 3 0.139










Glycan Biosynthesis and Metabolism KEGG 18 0.000 2 0.056










aspartate degradation I AraCyc 16 0.000 2 0.013










aspartate degradation II AraCyc 16 0.000 2 0.003










Carbon fixation KEGG 16 0.001 2 0.060










Cysteine metabolism KEGG 16 0.000 2 0.006










Glutamate metabolism KEGG 16 0.000 2 0.021










cellulose biosynthesis BioPath 14 0.000 2 0.042










Glycine, serine and threonine metabolism KEGG 14 0.000 2 0.013










acetyl-CoA assimilation AraCyc 12 0.001 2 0.024










glyoxylate cycle AraCyc 12 0.000 2 0.010










serine-isocitrate lyase pathway AraCyc 12 0.009 2 0.057










tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) FunCat 12 0.000 2 0.041










Stilbene, coumarine and lignin biosynthesis KEGG 12 0.026 2 0.157












































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP83A1 (At4g13770)







max. difference between log2-ratios: 5.5











max. difference between log2-ratios excluding lowest and highest 5%: 1.6











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






Biosynthesis of Amino Acids and Derivatives BioPath 82 0.000 13 0.000





Glucosinolate Metabolism LitPath 70 0.000 7 0.000




Branched-chain amino acids from aspartate BioPath 64 0.000 10 0.000




leucine biosynthesis AraCyc 42 0.000 7 0.000




Valine, leucine and isoleucine biosynthesis KEGG 42 0.000 6 0.000




glucosinolate biosynthesis TAIR-GO 40 0.000 4 0.000




Pyruvate metabolism KEGG 32 0.000 5 0.003




glucosinolate biosynthesis from homomethionine AraCyc 30 0.000 3 0.000




amino acid metabolism FunCat 30 0.000 5 0.001




Glycine, serine and threonine metabolism KEGG 26 0.000 4 0.001




Stilbene, coumarine and lignin biosynthesis KEGG 26 0.000 5 0.012




Flavonoid and anthocyanin metabolism BioPath 20 0.000 2 0.096




formylTHF biosynthesis AraCyc 20 0.000 3 0.001










photorespiration AraCyc 20 0.000 3 0.013










Ascorbate and aldarate metabolism KEGG 20 0.000 2 0.012










Fluorene degradation KEGG 20 0.000 2 0.003










gamma-Hexachlorocyclohexane degradation KEGG 20 0.000 2 0.004










development TAIR-GO 19 0.000 2 0.014










Glutathione metabolism BioPath 18 0.002 3 0.047










TCA cycle -- aerobic respiration AraCyc 18 0.000 4 0.009










TCA cycle variation VII AraCyc 18 0.008 4 0.043










TCA cycle variation VIII AraCyc 18 0.000 4 0.011










serine-isocitrate lyase pathway AraCyc 16 0.001 4 0.007










TCA cycle variation IV AraCyc 16 0.000 3 0.034










Glutamate metabolism KEGG 16 0.000 2 0.051










formaldehyde assimilation I (serine pathway) AraCyc 14 0.000 3 0.012










Miscellaneous acyl lipid metabolism AcylLipid 14 0.034 7 0.004










Gluconeogenesis from lipids in seeds BioPath 13 0.046 2 0.153










isoleucine degradation I AraCyc 13 0.000 2 0.027










isoleucine degradation III AraCyc 13 0.000 2 0.004










leucine degradation I AraCyc 13 0.000 2 0.027










leucine degradation II AraCyc 13 0.000 2 0.004










valine degradation I AraCyc 13 0.000 2 0.066










valine degradation II AraCyc 13 0.000 2 0.010










ascorbate glutathione cycle AraCyc 12 0.000 2 0.009










Glutathione metabolism KEGG 12 0.002 2 0.048










Methane metabolism KEGG 12 0.001 4 0.020










Phenylalanine metabolism KEGG 12 0.012 4 0.026










detoxification FunCat 11 0.000 2 0.000










detoxification involving cytochrome P450 FunCat 11 0.000 2 0.000





























































Pathways co-expressed in the Mutant data set (with more than 20 annotation points)
CYP83A1 (At4g13770)







max. difference between log2-ratios: 10.2











max. difference between log2-ratios excluding lowest and highest 5%: 2.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Biosynthesis of Amino Acids and Derivatives BioPath 116 0.000 16 0.000



Glucosinolate Metabolism LitPath 70 0.000 7 0.000


amino acid metabolism FunCat 66 0.000 8 0.000


Pyruvate metabolism KEGG 62 0.000 7 0.001


Branched-chain amino acids from aspartate BioPath 48 0.000 8 0.000


C-compound and carbohydrate metabolism FunCat 46 0.001 7 0.080


leucine biosynthesis AraCyc 42 0.000 7 0.000


Valine, leucine and isoleucine biosynthesis KEGG 42 0.000 6 0.000


glucosinolate biosynthesis TAIR-GO 40 0.000 4 0.000


sulfate assimilation III AraCyc 40 0.000 4 0.005


Cysteine metabolism KEGG 36 0.000 4 0.001


Oxidative phosphorylation KEGG 31 0.000 5 0.013


glucosinolate biosynthesis from homomethionine AraCyc 30 0.000 3 0.000










TCA cycle -- aerobic respiration AraCyc 30 0.000 5 0.005










TCA cycle variation VII AraCyc 30 0.000 5 0.031










TCA cycle variation VIII AraCyc 30 0.000 5 0.006










Selenoamino acid metabolism KEGG 30 0.000 3 0.008










Sulfur metabolism KEGG 30 0.000 3 0.003










Glutathione metabolism BioPath 28 0.000 4 0.021










TCA cycle variation IV AraCyc 28 0.000 4 0.017










Leaf Glycerolipid Biosynthesis in Plastid BioPath 24 0.000 3 0.043










serine-isocitrate lyase pathway AraCyc 24 0.000 4 0.017










transport FunCat 23 0.000 3 0.000










transport facilitation FunCat 23 0.000 3 0.000










aspartate degradation I AraCyc 22 0.000 3 0.011










aspartate degradation II AraCyc 22 0.000 3 0.002










formaldehyde assimilation I (serine pathway) AraCyc 22 0.000 3 0.024










Carbon fixation KEGG 22 0.005 3 0.097










Nitrogen metabolism KEGG 22 0.000 3 0.010



























page created by Juergen Ehlting 05/19/06