| _________________________________________ |
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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| Stilbene, coumarine and lignin biosynthesis |
KEGG |
126 |
33 |
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| monoterpene biosynthesis |
LitPath |
65 |
7 |
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| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
60 |
10 |
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| monoterpene biosynthesis |
AraCyc |
55 |
6 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| detoxification |
FunCat |
51 |
11 |
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| Ascorbate and aldarate metabolism |
KEGG |
50 |
5 |
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| Fluorene degradation |
KEGG |
50 |
5 |
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For more information on how these pathway maps were generated please read the methods page |
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| gamma-Hexachlorocyclohexane degradation |
KEGG |
50 |
5 |
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| detoxification involving cytochrome P450 |
FunCat |
43 |
7 |
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| fatty acid metabolism |
TAIR-GO |
40 |
4 |
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| fatty acid modulation |
LitPath |
40 |
4 |
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| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) |
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CYP86A1 (At5g58860) |
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| max. difference between log2-ratios: |
4.2 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
5.9 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to organ heatmap |
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| Stilbene, coumarine and lignin biosynthesis |
KEGG |
42 |
0.000 |
15 |
0.000 |
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| Methane metabolism |
KEGG |
32 |
0.000 |
14 |
0.000 |
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| Phenylalanine metabolism |
KEGG |
32 |
0.000 |
14 |
0.000 |
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| Prostaglandin and leukotriene metabolism |
KEGG |
32 |
0.000 |
14 |
0.000 |
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| Phenylpropanoid Metabolism |
BioPath |
27 |
0.000 |
7 |
0.000 |
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| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
27 |
0.000 |
4 |
0.005 |
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| terpenoid metabolism |
LitPath |
27 |
0.000 |
4 |
0.005 |
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| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
20 |
0.000 |
4 |
0.021 |
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| monoterpenoid biosynthesis |
TAIR-GO |
19 |
0.000 |
2 |
0.000 |
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| monoterpene biosynthesis |
LitPath |
19 |
0.000 |
2 |
0.000 |
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| Lipid signaling |
AcylLipid |
18 |
0.029 |
3 |
0.539 |
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| cation transport (Na, K, Ca , NH4, etc.) |
FunCat |
17 |
0.000 |
2 |
0.000 |
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| detoxification |
FunCat |
17 |
0.000 |
5 |
0.000 |
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| heavy metal ion transport (Cu, Fe, etc.) |
FunCat |
17 |
0.000 |
2 |
0.000 |
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| ion transport |
FunCat |
17 |
0.000 |
2 |
0.000 |
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| transport |
FunCat |
17 |
0.000 |
2 |
0.000 |
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| transport facilitation |
FunCat |
17 |
0.000 |
2 |
0.000 |
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| transported compounds (substrates) |
FunCat |
17 |
0.000 |
2 |
0.000 |
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| Miscellaneous acyl lipid metabolism |
AcylLipid |
16 |
0.043 |
8 |
0.006 |
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| isoprenoid biosynthesis |
FunCat |
15 |
0.000 |
3 |
0.004 |
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| lipid, fatty acid and isoprenoid biosynthesis |
FunCat |
15 |
0.000 |
3 |
0.003 |
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| Flavonoid and anthocyanin metabolism |
BioPath |
11 |
0.000 |
4 |
0.000 |
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| detoxification involving cytochrome P450 |
FunCat |
11 |
0.000 |
2 |
0.000 |
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| Glucosyltransferases for benzoic acids |
BioPath |
10 |
0.000 |
1 |
0.005 |
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| Transporters required for plastid development |
BioPath |
10 |
0.000 |
1 |
0.000 |
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| cell death |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| fatty acid alpha-oxidation |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| fatty acid metabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.021 |
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| iron ion homeostasis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| toxin catabolism |
TAIR-GO |
10 |
0.000 |
5 |
0.000 |
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| jasmonic acid biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.004 |
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| lipoxygenase pathway |
AraCyc |
10 |
0.000 |
1 |
0.002 |
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| Ascorbate and aldarate metabolism |
KEGG |
10 |
0.000 |
1 |
0.058 |
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| Fluorene degradation |
KEGG |
10 |
0.000 |
1 |
0.022 |
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| gamma-Hexachlorocyclohexane degradation |
KEGG |
10 |
0.000 |
1 |
0.028 |
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| fatty acid modulation |
LitPath |
10 |
0.000 |
1 |
0.001 |
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| flavonol biosynthesis |
AraCyc |
9 |
0.000 |
3 |
0.000 |
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| monoterpene biosynthesis |
AraCyc |
9 |
0.000 |
1 |
0.000 |
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| plant monoterpene biosynthesis |
AraCyc |
9 |
0.000 |
1 |
0.000 |
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| storage protein |
FunCat |
8 |
0.000 |
2 |
0.000 |
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| flavonoid, anthocyanin, and proanthocyanidin biosynthesis |
LitPath |
8 |
0.001 |
2 |
0.007 |
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| proanthocyanidin biosynthesis |
LitPath |
8 |
0.001 |
2 |
0.007 |
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| pentacyclic triterpenoid biosynthesis |
TAIR-GO |
7 |
0.000 |
1 |
0.002 |
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| Biosynthesis of steroids |
KEGG |
7 |
0.016 |
1 |
0.162 |
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| triterpene biosynthesis |
LitPath |
7 |
0.001 |
1 |
0.053 |
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| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) |
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CYP86A1 (At5g58860) |
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| max. difference between log2-ratios: |
0.9 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
6.4 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to stress heatmap |
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| Stilbene, coumarine and lignin biosynthesis |
KEGG |
28 |
0.000 |
8 |
0.000 |
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| Methane metabolism |
KEGG |
18 |
0.000 |
7 |
0.000 |
| Phenylalanine metabolism |
KEGG |
18 |
0.000 |
7 |
0.000 |
| Prostaglandin and leukotriene metabolism |
KEGG |
18 |
0.000 |
7 |
0.000 |
| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
14 |
0.000 |
2 |
0.097 |
| detoxification |
FunCat |
12 |
0.000 |
2 |
0.000 |
| Intermediary Carbon Metabolism |
BioPath |
10 |
0.000 |
1 |
0.000 |
| fatty acid metabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.001 |
| acetyl-CoA assimilation |
AraCyc |
10 |
0.000 |
1 |
0.005 |
| glyoxylate cycle |
AraCyc |
10 |
0.000 |
1 |
0.003 |
| leucine biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.001 |
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| serine-isocitrate lyase pathway |
AraCyc |
10 |
0.000 |
1 |
0.010 |
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| TCA cycle -- aerobic respiration |
AraCyc |
10 |
0.000 |
1 |
0.011 |
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| TCA cycle variation VII |
AraCyc |
10 |
0.000 |
1 |
0.024 |
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| TCA cycle variation VIII |
AraCyc |
10 |
0.000 |
1 |
0.012 |
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| C-compound and carbohydrate glyoxylate cycle |
FunCat |
10 |
0.000 |
1 |
0.000 |
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| detoxification involving cytochrome P450 |
FunCat |
10 |
0.000 |
1 |
0.002 |
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| glyoxylate cycle |
FunCat |
10 |
0.000 |
1 |
0.000 |
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| tricarboxylic-acid pathway (citrate cycle, Krebs cycle, TCA cycle) |
FunCat |
10 |
0.000 |
1 |
0.093 |
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| Ascorbate and aldarate metabolism |
KEGG |
10 |
0.000 |
1 |
0.022 |
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| Citrate cycle (TCA cycle) |
KEGG |
10 |
0.000 |
1 |
0.054 |
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| Fluorene degradation |
KEGG |
10 |
0.000 |
1 |
0.008 |
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| gamma-Hexachlorocyclohexane degradation |
KEGG |
10 |
0.000 |
1 |
0.010 |
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| Glyoxylate and dicarboxylate metabolism |
KEGG |
10 |
0.000 |
1 |
0.027 |
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| Reductive carboxylate cycle (CO2 fixation) |
KEGG |
10 |
0.000 |
1 |
0.014 |
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| fatty acid modulation |
LitPath |
10 |
0.000 |
1 |
0.000 |
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| storage protein |
FunCat |
8 |
0.000 |
2 |
0.000 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) |
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CYP86A1 (At5g58860) |
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| max. difference between log2-ratios: |
1.2 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
2.7 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
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| Stilbene, coumarine and lignin biosynthesis |
KEGG |
42 |
0.000 |
7 |
0.000 |
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| core phenylpropanoid metabolism |
BioPath |
20 |
0.000 |
2 |
0.002 |
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| Phenylpropanoid Metabolism |
BioPath |
20 |
0.000 |
2 |
0.080 |
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| response to UV |
TAIR-GO |
20 |
0.000 |
2 |
0.000 |
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| Ascorbate and aldarate metabolism |
KEGG |
20 |
0.000 |
2 |
0.002 |
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| Fluorene degradation |
KEGG |
20 |
0.000 |
2 |
0.000 |
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| gamma-Hexachlorocyclohexane degradation |
KEGG |
20 |
0.000 |
2 |
0.001 |
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| Phenylpropanoid pathway |
LitPath |
20 |
0.035 |
2 |
0.316 |
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| monoterpenoid biosynthesis |
TAIR-GO |
19 |
0.000 |
2 |
0.000 |
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| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
19 |
0.000 |
2 |
0.038 |
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| monoterpene biosynthesis |
LitPath |
19 |
0.000 |
2 |
0.000 |
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| terpenoid metabolism |
LitPath |
19 |
0.000 |
2 |
0.041 |
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| biogenesis of cell wall |
FunCat |
16 |
0.000 |
2 |
0.010 |
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| glycolysis and gluconeogenesis |
FunCat |
16 |
0.000 |
3 |
0.008 |
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| Biosynthesis of steroids |
KEGG |
16 |
0.000 |
2 |
0.010 |
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| Miscellaneous acyl lipid metabolism |
AcylLipid |
14 |
0.000 |
7 |
0.000 |
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| Methane metabolism |
KEGG |
12 |
0.000 |
4 |
0.001 |
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| Phenylalanine metabolism |
KEGG |
12 |
0.000 |
4 |
0.001 |
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| Prostaglandin and leukotriene metabolism |
KEGG |
12 |
0.000 |
4 |
0.000 |
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| Starch and sucrose metabolism |
KEGG |
12 |
0.002 |
2 |
0.036 |
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| detoxification |
FunCat |
11 |
0.000 |
2 |
0.000 |
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| detoxification involving cytochrome P450 |
FunCat |
11 |
0.000 |
2 |
0.000 |
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| Carotenoid biosynthesis |
BioPath |
10 |
0.000 |
1 |
0.002 |
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| Glutathione metabolism |
BioPath |
10 |
0.000 |
1 |
0.063 |
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| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) |
BioPath |
10 |
0.015 |
1 |
0.087 |
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| UDP-carbohydrate metabolism |
BioPath |
10 |
0.000 |
2 |
0.000 |
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| carotene biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| fatty acid metabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.017 |
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| glucosinolate biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.002 |
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| glutathione metabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| phenylpropanoid metabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.001 |
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|
|
|
|
|
|
|
| photosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.011 |
|
|
|
|
|
|
|
|
|
|
|
| photosynthesis light harvesting |
TAIR-GO |
10 |
0.000 |
1 |
0.002 |
|
|
|
|
|
|
|
|
|
|
|
| ascorbate glutathione cycle |
AraCyc |
10 |
0.000 |
1 |
0.011 |
|
|
|
|
|
|
|
|
|
|
|
| carotenoid biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.004 |
|
|
|
|
|
|
|
|
|
|
|
| colanic acid building blocks biosynthesis |
AraCyc |
10 |
0.000 |
2 |
0.019 |
|
|
|
|
|
|
|
|
|
|
|
| flavonoid biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.031 |
|
|
|
|
|
|
|
|
|
|
|
| formylTHF biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.014 |
|
|
|
|
|
|
|
|
|
|
|
| glucose and glucose-1-phosphate degradation |
AraCyc |
10 |
0.000 |
2 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| glucosinolate biosynthesis from homomethionine |
AraCyc |
10 |
0.000 |
1 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| glucosinolate biosynthesis from phenylalanine |
AraCyc |
10 |
0.000 |
1 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| lactose degradation IV |
AraCyc |
10 |
0.000 |
2 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| lignin biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.074 |
|
|
|
|
|
|
|
|
|
|
|
| photorespiration |
AraCyc |
10 |
0.000 |
1 |
0.047 |
|
|
|
|
|
|
|
|
|
|
|
| suberin biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.014 |
|
|
|
|
|
|
|
|
|
|
|
| sucrose biosynthesis |
AraCyc |
10 |
0.000 |
2 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| trehalose biosynthesis I |
AraCyc |
10 |
0.003 |
2 |
0.042 |
|
|
|
|
|
|
|
|
|
|
|
| trehalose biosynthesis II |
AraCyc |
10 |
0.000 |
2 |
0.017 |
|
|
|
|
|
|
|
|
|
|
|
| trehalose biosynthesis III |
AraCyc |
10 |
0.000 |
2 |
0.004 |
|
|
|
|
|
|
|
|
|
|
|
| biogenesis of chloroplast |
FunCat |
10 |
0.001 |
1 |
0.068 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) |
|
CYP86A1 (At5g58860) |
|
|
|
|
|
|
|
|
| max. difference between log2-ratios: |
* |
|
|
|
|
|
|
|
|
|
|
|
|
| max. difference between log2-ratios excluding lowest and highest 5%: |
* |
|
|
|
|
|
|
|
|
|
|
|
|
| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
|
|
|
|
|
|
|
| Fatty acid elongation and wax and cutin metabolism |
AcylLipid |
16 |
0.000 |
3 |
0.002 |
|
|
|
|
|
|
|
|
|
|
|
| Stilbene, coumarine and lignin biosynthesis |
KEGG |
14 |
0.000 |
3 |
0.000 |
|
|
|
|
| mono-/sesqui-/di-terpene biosynthesis |
LitPath |
13 |
0.000 |
2 |
0.003 |
|
|
|
| terpenoid metabolism |
LitPath |
13 |
0.000 |
2 |
0.003 |
|
|
|
| detoxification |
FunCat |
11 |
0.000 |
2 |
0.000 |
|
|
|
| detoxification involving cytochrome P450 |
FunCat |
11 |
0.000 |
2 |
0.000 |
|
|
|
| Glucosyltransferases for benzoic acids |
BioPath |
10 |
0.000 |
1 |
0.000 |
|
|
|
| Phenylpropanoid Metabolism |
BioPath |
10 |
0.000 |
1 |
0.023 |
|
|
|
|
|
|
|
|
|
|
|
| fatty acid metabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| flavonol biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.003 |
|
|
|
|
|
|
|
|
|
|
|
| Ascorbate and aldarate metabolism |
KEGG |
10 |
0.000 |
1 |
0.003 |
|
|
|
|
|
|
|
|
|
|
|
| Fluorene degradation |
KEGG |
10 |
0.000 |
1 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| gamma-Hexachlorocyclohexane degradation |
KEGG |
10 |
0.000 |
1 |
0.002 |
|
|
|
|
|
|
|
|
|
|
|
| fatty acid modulation |
LitPath |
10 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| monoterpenoid biosynthesis |
TAIR-GO |
9 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| monoterpene biosynthesis |
AraCyc |
9 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| plant monoterpene biosynthesis |
AraCyc |
9 |
0.000 |
1 |
0.000 |
|
|
|
|
|
|
|
|
|
|
|
| monoterpene biosynthesis |
LitPath |
9 |
0.000 |
1 |
0.001 |
|
|
|
|
|
|
|
|
|
|
|
| Cell Wall Carbohydrate Metabolism |
BioPath |
8 |
0.006 |
1 |
0.080 |
|
|
|
|
|
|
|
|
|
|
|
| pectin metabolism |
BioPath |
8 |
0.000 |
1 |
0.017 |
|
|
|
|
|
|
|
|
|
|
|
| C-compound and carbohydrate metabolism |
FunCat |
8 |
0.006 |
1 |
0.172 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|