Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)






CYP86A2 (At4g00360) save all data as Tab Delimited Table












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Pathways co-expressed in all 4 data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.









Pathway Source Sum of scores Sum of genes









chlorophyll biosynthesis TAIR-GO 275 31









chlorophyll biosynthesis LitPath 259 29









Fatty acid elongation and wax and cutin metabolism AcylLipid 202 34









cuticle biosynthesis TAIR-GO 109 17
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.










wax biosynthesis TAIR-GO 102 13











brassinosteroid biosynthesis BioPath 102 11











Ascorbate and aldarate metabolism KEGG 82 10
For more information on how these pathway maps were generated please read the methods page










starch biosynthesis AraCyc 75 9











starch biosynthesis TAIR-GO 74 9














cellulose biosynthesis TAIR-GO 74 13














Fluorene degradation KEGG 56 6














epicuticular wax biosynthesis AraCyc 56 7














biosynthesis of extracellular lipids LitPath 36 4




















































Pathways co-expressed in the Organ and Tissue data set (with more than 39 annotation points)
CYP86A2 (At4g00360)









max. difference between log2-ratios: 6.6













max. difference between log2-ratios excluding lowest and highest 5%: 5.4













Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap








Photosystems BioPath 327 0.000 50 0.000




Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 140 0.000 19 0.001



Photosynthesis KEGG 135 0.000 24 0.000



Photosystem I BioPath 131 0.000 22 0.000



additional photosystem II components BioPath 130 0.000 19 0.000



biogenesis of chloroplast FunCat 125 0.000 19 0.000



photosynthesis FunCat 124 0.000 19 0.000



Chlorophyll a/b binding proteins BioPath 108 0.000 13 0.000



transport FunCat 99 0.000 16 0.000



glycolysis and gluconeogenesis FunCat 85 0.000 12 0.035



photosystem I TAIR-GO 77 0.000 9 0.000



Photosystem II BioPath 73 0.000 10 0.003



Carbon fixation KEGG 72 0.000 10 0.000



transport facilitation FunCat 65 0.000 10 0.000












photosystem II TAIR-GO 61 0.000 7 0.000












chlorophyll binding TAIR-GO 52 0.000 6 0.000












Biosynthesis of steroids KEGG 49 0.000 6 0.004












Glycolysis / Gluconeogenesis KEGG 48 0.000 7 0.019












Carotenoid and abscisic acid metabolism LitPath 48 0.000 6 0.000












Carotenoid biosynthesis BioPath 44 0.000 5 0.001












carotenoid biosynthesis AraCyc 44 0.000 5 0.000












carotenid biosynthesis LitPath 44 0.000 5 0.000












light harvesting complex BioPath 42 0.000 5 0.000












acetate fermentation AraCyc 42 0.000 6 0.245












fructose degradation (anaerobic) AraCyc 42 0.000 6 0.189












glycolysis IV AraCyc 42 0.000 6 0.200












sorbitol fermentation AraCyc 42 0.000 6 0.222












Calvin cycle AraCyc 40 0.000 7 0.006












gluconeogenesis AraCyc 40 0.000 5 0.116












photorespiration AraCyc 40 0.000 9 0.000


















































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP86A2 (At4g00360)









max. difference between log2-ratios: 7.1













max. difference between log2-ratios excluding lowest and highest 5%: 2.2













Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to stress heatmap








Fatty acid elongation and wax and cutin metabolism AcylLipid 55 0.000 9 0.000
fatty acid metabolism TAIR-GO 44 0.000 6 0.000
cuticle biosynthesis TAIR-GO 41 0.000 6 0.000
long-chain fatty acid metabolism TAIR-GO 35 0.000 5 0.000
very-long-chain fatty acid metabolism TAIR-GO 35 0.000 5 0.000
wax biosynthesis TAIR-GO 30 0.000 4 0.000
fatty acid elongation TAIR-GO 23 0.000 3 0.000
atty acid elongation -- unsaturated AraCyc 23 0.000 4 0.000
fatty acid biosynthesis -- initial steps AraCyc 23 0.000 4 0.000
fatty acid elongation -- saturated AraCyc 23 0.000 4 0.000
fatty acid elongation -- unsaturated AraCyc 23 0.000 4 0.000
Photosystems BioPath 16 0.000 2 0.062












acetyl-CoA assimilation AraCyc 16 0.000 2 0.006












epicuticular wax biosynthesis AraCyc 16 0.000 2 0.000












glyoxylate cycle AraCyc 16 0.000 2 0.002












serine-isocitrate lyase pathway AraCyc 16 0.000 2 0.016












TCA cycle -- aerobic respiration AraCyc 16 0.000 2 0.018












TCA cycle variation IV AraCyc 16 0.000 2 0.016












TCA cycle variation VII AraCyc 16 0.000 2 0.051












TCA cycle variation VIII AraCyc 16 0.000 2 0.020












biogenesis of cell wall FunCat 12 0.000 2 0.010












isoprenoid biosynthesis FunCat 12 0.000 3 0.001












lipid, fatty acid and isoprenoid biosynthesis FunCat 12 0.000 3 0.000


















































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP86A2 (At4g00360)









max. difference between log2-ratios: 3.6













max. difference between log2-ratios excluding lowest and highest 5%: 1.4













Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap








Fatty acid elongation and wax and cutin metabolism AcylLipid 51 0.000 9 0.000







fatty acid metabolism TAIR-GO 33 0.000 5 0.000






cuticle biosynthesis TAIR-GO 24 0.000 4 0.000






long-chain fatty acid metabolism TAIR-GO 24 0.000 4 0.000






very-long-chain fatty acid metabolism TAIR-GO 24 0.000 4 0.000






wax biosynthesis TAIR-GO 24 0.000 3 0.000






Synthesis of membrane lipids in endomembrane system AcylLipid 22 0.000 3 0.049












Cell Wall Carbohydrate Metabolism BioPath 16 0.000 4 0.011












acetyl-CoA assimilation AraCyc 16 0.000 2 0.003












atty acid elongation -- unsaturated AraCyc 16 0.000 4 0.000












cellulose biosynthesis AraCyc 16 0.000 3 0.001












epicuticular wax biosynthesis AraCyc 16 0.000 2 0.000












fatty acid biosynthesis -- initial steps AraCyc 16 0.000 4 0.000












fatty acid elongation -- saturated AraCyc 16 0.000 4 0.000












fatty acid elongation -- unsaturated AraCyc 16 0.000 4 0.000












glyoxylate cycle AraCyc 16 0.000 2 0.001












serine-isocitrate lyase pathway AraCyc 16 0.000 2 0.007












TCA cycle -- aerobic respiration AraCyc 16 0.000 2 0.008












TCA cycle variation IV AraCyc 16 0.000 2 0.007












TCA cycle variation VII AraCyc 16 0.000 2 0.024












TCA cycle variation VIII AraCyc 16 0.000 2 0.009












cellulose biosynthesis BioPath 12 0.000 2 0.001












cell wall biosynthesis (sensu Magnoliophyta) TAIR-GO 12 0.000 2 0.003












cellulose biosynthesis TAIR-GO 12 0.000 2 0.001












primary cell wall biosynthesis (sensu Magnoliophyta) TAIR-GO 12 0.000 2 0.000












isoprenoid biosynthesis FunCat 12 0.000 3 0.000












lipid, fatty acid and isoprenoid biosynthesis FunCat 12 0.000 3 0.000





































































Pathways co-expressed in the Mutant data set (with more than 60 annotation points)
CYP86A2 (At4g00360)









max. difference between log2-ratios: 6.0













max. difference between log2-ratios excluding lowest and highest 5%: 1.8













Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap








Photosystems BioPath 339 0.000 47 0.000





C-compound and carbohydrate metabolism FunCat 221 0.000 38 0.037




Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) BioPath 208 0.000 26 0.000




biogenesis of chloroplast FunCat 161 0.000 24 0.000




additional photosystem II components BioPath 144 0.000 19 0.000




photosynthesis FunCat 142 0.000 21 0.000




transport FunCat 141 0.000 23 0.000




Photosynthesis KEGG 127 0.000 20 0.000




glycolysis and gluconeogenesis FunCat 121 0.000 20 0.018




Chlorophyll a/b binding proteins BioPath 118 0.000 15 0.000




Photosystem I BioPath 111 0.000 17 0.003




chlorophyll biosynthesis AraCyc 106 0.000 13 0.003




Carbon fixation KEGG 106 0.000 17 0.000




Chlorophyll biosynthesis and breakdown BioPath 103 0.000 12 0.001




transport facilitation FunCat 101 0.000 16 0.000












chlorophyll and phytochromobilin metabolism LitPath 97 0.000 11 0.000












Biosynthesis of steroids KEGG 95 0.000 10 0.004












fatty acid biosynthesis TAIR-GO 86 0.000 10 0.000












chlorophyll biosynthesis TAIR-GO 85 0.000 9 0.000












Porphyrin and chlorophyll metabolism KEGG 83 0.000 10 0.000












Glycolysis / Gluconeogenesis KEGG 78 0.000 14 0.006












Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 76 0.000 9 0.017












Selenoamino acid metabolism KEGG 76 0.000 9 0.000












triterpene, sterol, and brassinosteroid metabolism LitPath 72 0.004 8 0.374












Photosystem II BioPath 65 0.025 8 0.177












Nitrogen metabolism KEGG 65 0.000 9 0.001












Calvin cycle AraCyc 64 0.000 12 0.000












Fatty acid elongation and wax and cutin metabolism AcylLipid 61 0.000 10 0.017































page created by Alexandre OLRY 04/26/06