Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP86A7 (At1g63710)	save all data as Tab Delimited Table
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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
Pathway	Source	Sum of scores	Sum of genes
Fatty acid elongation and wax and cutin metabolism	AcylLipid	47	12
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 10 annotation points)						CYP86A7 (At1g63710)
max. difference between log2-ratios:				8.0
max. difference between log2-ratios excluding lowest and highest 5%:				5.1
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
Miscellaneous acyl lipid metabolism	AcylLipid	54	0.000	16	0.000
Fatty acid elongation and wax and cutin metabolism	AcylLipid	30	0.000	8	0.001
fatty acid metabolism	TAIR-GO	28	0.000	4	0.000
sexual reproduction	TAIR-GO	20	0.000	5	0.000
cuticle biosynthesis	TAIR-GO	19	0.000	3	0.000
long-chain fatty acid metabolism	TAIR-GO	19	0.000	3	0.000
very-long-chain fatty acid metabolism	TAIR-GO	19	0.000	3	0.000
fatty acid biosynthesis -- initial steps	AraCyc	19	0.000	4	0.000
atty acid elongation -- unsaturated	AraCyc	17	0.000	3	0.000
fatty acid elongation -- saturated	AraCyc	17	0.000	3	0.000
fatty acid elongation	TAIR-GO	15	0.000	2	0.000
fatty acid elongation -- unsaturated	AraCyc	15	0.000	2	0.000
Biosynthesis of prenyl diphosphates	BioPath	14	0.000	3	0.001
Cell Wall Carbohydrate Metabolism	BioPath	14	0.016	4	0.223
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria	BioPath	14	0.000	3	0.003
pectin metabolism	BioPath	14	0.000	4	0.013
Gluconeogenesis from lipids in seeds	BioPath	12	0.000	2	0.028
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP86A7 (At1g63710)
max. difference between log2-ratios:				4.9
max. difference between log2-ratios excluding lowest and highest 5%:				2.5
						Link to stress heatmap
there are no co-expressed genes with more than 6 annotation points
Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)						CYP86A7 (At1g63710)
max. difference between log2-ratios:				5.4
max. difference between log2-ratios excluding lowest and highest 5%:				0.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
Cell Wall Carbohydrate Metabolism	BioPath	89	0.000	22	0.000
pectin metabolism	BioPath	67	0.000	18	0.000
terpenoid metabolism	LitPath	50	0.000	5	0.000
mono-/sesqui-/di-terpene biosynthesis	LitPath	50	0.000	5	0.000
Miscellaneous acyl lipid metabolism	AcylLipid	48	0.000	18	0.000
Starch and sucrose metabolism	KEGG	42	0.000	6	0.000
monoterpene biosynthesis	LitPath	20	0.000	2	0.000
sexual reproduction	TAIR-GO	20	0.000	5	0.000
Galactose metabolism	KEGG	16	0.000	2	0.002
sucrose metabolism	BioPath	16	0.000	2	0.004
C-compound and carbohydrate utilization	FunCat	14	0.000	2	0.000
biogenesis of cell wall	FunCat	14	0.000	6	0.000
Oxidative phosphorylation	KEGG	12	0.000	3	0.002
transport	FunCat	12	0.000	5	0.000
Fatty acid elongation and wax and cutin metabolism	AcylLipid	12	0.004	3	0.130
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP86A7 (At1g63710)
max. difference between log2-ratios:				5.9
max. difference between log2-ratios excluding lowest and highest 5%:				2.0
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
fatty acid metabolism	TAIR-GO	9	0.000	1	0.000
Fatty acid elongation and wax and cutin metabolism	AcylLipid	9	0.000	1	0.000
Cell Wall Carbohydrate Metabolism	BioPath	8	0.000	2	0.007
pectin metabolism	BioPath	8	0.000	2	0.001
Pentose and glucuronate interconversions	KEGG	8	0.000	2	0.000
page created by Juergen Ehlting	06/26/06