Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)






CYP86B2 (At5g08250) save all data as Tab Delimited Table












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Pathways co-expressed in the 2 data sets with co-expressed genes (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.









Pathway Source Sum of scores Sum of genes









Leaf Glycerolipid Biosynthesis in cytosol / ER BioPath 14 2









Synthesis of membrane lipids in endomembrane system AcylLipid 14 2




























To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.















































For more information on how these pathway maps were generated please read the methods page
































































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP86B2 (At5g08250)









max. difference between log2-ratios: 3.0













max. difference between log2-ratios excluding lowest and highest 5%: 1.1













Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap








Leaf Glycerolipid Biosynthesis BioPath 7 0.000 1 0.004



Leaf Glycerolipid Biosynthesis in cytosol / ER BioPath 7 0.000 1 0.000


Synthesis of membrane lipids in endomembrane system AcylLipid 7 0.000 1 0.009


















































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP86B2 (At5g08250)









max. difference between log2-ratios: 2.7













max. difference between log2-ratios excluding lowest and highest 5%: 1.0



















Link to stress heatmap








There are no co-expressed pathways with more than 6 annotation point































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP86B2 (At5g08250)









max. difference between log2-ratios: 3.2













max. difference between log2-ratios excluding lowest and highest 5%: 0.1













Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap








Phenylpropanoid Metabolism BioPath 13 0.000 3 0.003






degradation of abscisic acid LitPath 10 0.000 1 0.000





Flavonoid and anthocyanin metabolism BioPath 9 0.000 2 0.001





abscisic acid mediated signaling TAIR-GO 9 0.000 1 0.000





polyamine biosynthesis TAIR-GO 9 0.000 1 0.000





regulation of stomatal movement TAIR-GO 9 0.000 1 0.000





response to abscisic acid stimulus TAIR-GO 9 0.000 1 0.001





response to water deprivation TAIR-GO 9 0.000 1 0.000












polyamine biosynthesis I AraCyc 9 0.000 1 0.011












polyamine biosynthesis II AraCyc 9 0.000 1 0.004












polyamine biosynthesis III AraCyc 9 0.000 1 0.002












spermine biosynthesis I AraCyc 9 0.000 1 0.002












spermine biosynthesis II AraCyc 9 0.000 1 0.000












intracellular signalling FunCat 9 0.000 1 0.010












Arginine and proline metabolism KEGG 9 0.000 1 0.008












Benzoate degradation via CoA ligation KEGG 9 0.000 1 0.034












beta-Alanine metabolism KEGG 9 0.000 1 0.002












Inositol phosphate metabolism KEGG 9 0.000 1 0.040












Nicotinate and nicotinamide metabolism KEGG 9 0.000 1 0.029












Urea cycle and metabolism of amino groups KEGG 9 0.000 1 0.003












ascorbic acid biosynthesis BioPath 8 0.000 1 0.003












flavonoid biosynthesis TAIR-GO 8 0.000 1 0.000












ascorbate glutathione cycle AraCyc 8 0.000 1 0.004












mRNA synthesis FunCat 8 0.000 1 0.003












RNA synthesis FunCat 8 0.000 1 0.003












transcription FunCat 8 0.000 1 0.001












transcriptional control FunCat 8 0.000 1 0.000












Ascorbate and aldarate metabolism KEGG 8 0.000 1 0.003












Leaf Glycerolipid Biosynthesis in cytosol / ER BioPath 7 0.000 1 0.005












Synthesis of membrane lipids in endomembrane system AcylLipid 7 0.000 1 0.049





































































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP86B2 (At5g08250)









max. difference between log2-ratios: 3.9













max. difference between log2-ratios excluding lowest and highest 5%: 1.0



















Link to mutants heatmap








There are no co-expressed pathways with more than 6 annotation point
























page created by Alexandre OLRY 04/26/06