Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)






CYP86C3 (At1g13140) save all data as Tab Delimited Table












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Pathways co-expressed in the 3 applicable data sets (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.









Pathway Source Sum of scores Sum of genes









Cell Wall Carbohydrate Metabolism BioPath 202 49









pectin metabolism BioPath 154 40









Miscellaneous acyl lipid metabolism AcylLipid 138 51









Fatty acid elongation and wax and cutin metabolism AcylLipid 69 19
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.










Phenylpropanoid pathway LitPath 64 15











sexual reproduction TAIR-GO 60 15











fatty acid metabolism TAIR-GO 47 8
For more information on how these pathway maps were generated please read the methods page










ubiquinone biosynthesis BioPath 32 4











ubiquinone biosynthesis BioPath 32 4














cellulose biosynthesis BioPath 28 6




















































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP86C3 (At1g13140)









max. difference between log2-ratios: 3.0













max. difference between log2-ratios excluding lowest and highest 5%: 6.2













Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap








Miscellaneous acyl lipid metabolism AcylLipid 42 0.000 15 0.000


Fatty acid elongation and wax and cutin metabolism AcylLipid 34 0.000 8 0.002

fatty acid metabolism TAIR-GO 26 0.000 4 0.000

Cell Wall Carbohydrate Metabolism BioPath 24 0.000 6 0.098

Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 22 0.000 4 0.001

sexual reproduction TAIR-GO 20 0.000 5 0.000

Biosynthesis of prenyl diphosphates BioPath 14 0.000 3 0.002

pectin metabolism BioPath 14 0.000 4 0.031

polyisoprenoid biosynthesis AraCyc 12 0.000 3 0.000

Phenylpropanoid pathway LitPath 11 0.002 5 0.001

cellulose biosynthesis BioPath 10 0.000 2 0.016

gibberellic acid catabolism TAIR-GO 10 0.000 1 0.001

Diterpenoid biosynthesis KEGG 10 0.000 1 0.001

Gibberellin metabolism LitPath 10 0.000 1 0.028

giberelin catabolism LitPath 10 0.000 1 0.000

prenyl diphosphate (GPP,FPP, GGPP) biosynthesis LitPath 10 0.000 1 0.022












lignin biosynthesis AraCyc 9 0.000 4 0.000












hemicellulose biosynthesis BioPath 8 0.000 1 0.015












ubiquinone biosynthesis BioPath 8 0.000 1 0.001












cell wall organization and biogenesis (sensu Magnoliophyta) TAIR-GO 8 0.000 1 0.000












cuticle biosynthesis TAIR-GO 8 0.000 2 0.000












long-chain fatty acid metabolism TAIR-GO 8 0.000 2 0.001












very-long-chain fatty acid metabolism TAIR-GO 8 0.000 2 0.000












biosynthesis of proto- and siroheme AraCyc 8 0.000 1 0.035












mevalonate pathway AraCyc 8 0.000 1 0.008












triacylglycerol degradation AraCyc 8 0.000 4 0.000












C-compound and carbohydrate utilization FunCat 8 0.000 2 0.000












metabolism of vitamins, cofactors, and prosthetic groups FunCat 8 0.000 1 0.000












Fructose and mannose metabolism KEGG 8 0.000 1 0.011












Glycan Biosynthesis and Metabolism KEGG 8 0.000 1 0.021












Glycerolipid metabolism KEGG 8 0.000 1 0.006












Ubiquinone biosynthesis KEGG 8 0.000 1 0.001












ubiquinone biosynthesis LitPath 8 0.000 1 0.001












suberin biosynthesis AraCyc 7 0.000 3 0.000


















































Pathways co-expressed in the Stress data set ( with more than 10 annotation points)
CYP86C3 (At1g13140)









max. difference between log2-ratios: 2.4













max. difference between log2-ratios excluding lowest and highest 5%: 0.0



















Link to stress heatmap








There are no co-expressed pathways with more than 6 annotation points












































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP86C3 (At1g13140)









max. difference between log2-ratios: 2.5













max. difference between log2-ratios excluding lowest and highest 5%: 0.4













Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones heatmap








Cell Wall Carbohydrate Metabolism BioPath 89 0.000 22 0.000







pectin metabolism BioPath 67 0.000 18 0.000






mono-/sesqui-/di-terpene biosynthesis LitPath 54 0.000 6 0.000






terpenoid metabolism LitPath 54 0.000 6 0.000






Miscellaneous acyl lipid metabolism AcylLipid 44 0.000 16 0.000






Starch and sucrose metabolism KEGG 42 0.000 6 0.000






core phenylpropanoid metabolism BioPath 22 0.000 3 0.009






Phenylpropanoid Metabolism BioPath 22 0.012 3 0.409






Phenylpropanoid pathway LitPath 22 0.043 3 0.247












sexual reproduction TAIR-GO 20 0.000 5 0.000












monoterpene biosynthesis LitPath 20 0.000 2 0.000












Fatty acid elongation and wax and cutin metabolism AcylLipid 19 0.000 5 0.038












sucrose metabolism BioPath 16 0.000 2 0.005












Galactose metabolism KEGG 16 0.000 2 0.003












biogenesis of cell wall FunCat 14 0.000 6 0.000












C-compound and carbohydrate utilization FunCat 14 0.000 2 0.000












fatty acid metabolism TAIR-GO 13 0.000 2 0.002












jasmonic acid biosynthesis TAIR-GO 10 0.000 1 0.018












jasmonic acid mediated signaling pathway TAIR-GO 10 0.000 1 0.000












jasmonic acid metabolism TAIR-GO 10 0.000 1 0.000












monoterpenoid biosynthesis TAIR-GO 10 0.000 1 0.001












N-terminal protein myristoylation TAIR-GO 10 0.000 1 0.006












pentacyclic triterpenoid biosynthesis TAIR-GO 10 0.000 1 0.003












response to wounding TAIR-GO 10 0.000 1 0.024












jasmonic acid biosynthesis AraCyc 10 0.000 1 0.002












monoterpene biosynthesis AraCyc 10 0.000 1 0.000












plant monoterpene biosynthesis AraCyc 10 0.000 1 0.000












C-compound, carbohydrate catabolism FunCat 10 0.000 3 0.003












Biosynthesis of steroids KEGG 10 0.000 1 0.064












sequiterpene biosynthesis LitPath 10 0.000 1 0.001












triterpene biosynthesis LitPath 10 0.000 1 0.039












cellulose biosynthesis AraCyc 8 0.000 2 0.000












lactose degradation IV AraCyc 8 0.000 2 0.000












transport FunCat 8 0.000 3 0.000












Oxidative phosphorylation KEGG 8 0.000 2 0.027





































































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP86C3 (At1g13140)









max. difference between log2-ratios: 7.1













max. difference between log2-ratios excluding lowest and highest 5%: 1.4













Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap








Cell Wall Carbohydrate Metabolism BioPath 89 0.000 21 0.000




pectin metabolism BioPath 73 0.000 18 0.000



Miscellaneous acyl lipid metabolism AcylLipid 52 0.000 20 0.000



C-compound and carbohydrate metabolism FunCat 40 0.000 12 0.008



Starch and sucrose metabolism KEGG 33 0.000 6 0.000



Phenylpropanoid pathway LitPath 31 0.000 7 0.000



Phenylpropanoid Metabolism BioPath 29 0.021 7 0.086



biogenesis of cell wall FunCat 28 0.000 9 0.000



Glycan Biosynthesis and Metabolism KEGG 26 0.000 4 0.002



core phenylpropanoid metabolism BioPath 24 0.000 4 0.006



Isoprenoid Biosynthesis in the Cytosol and in Mitochondria BioPath 20 0.001 3 0.086



sexual reproduction TAIR-GO 20 0.000 5 0.000



glycolysis and gluconeogenesis FunCat 16 0.029 4 0.143



Fatty acid elongation and wax and cutin metabolism AcylLipid 16 0.015 6 0.082



Glutamate/glutamine from nitrogen fixation BioPath 14 0.000 2 0.004



lactose degradation IV AraCyc 14 0.000 4 0.000












assimilation of ammonia, metabolism of the glutamate group FunCat 14 0.000 2 0.013












nitrogen and sulfur metabolism FunCat 14 0.000 2 0.011












Glutamate metabolism KEGG 14 0.000 2 0.022












Glycerolipid metabolism KEGG 14 0.000 2 0.011












Nitrogen metabolism KEGG 14 0.000 2 0.010












Oxidative phosphorylation KEGG 14 0.000 3 0.019












Biosynthesis of prenyl diphosphates BioPath 12 0.018 2 0.112












triacylglycerol degradation AraCyc 12 0.000 5 0.000












Galactose metabolism KEGG 12 0.000 2 0.009












lignin biosynthesis AraCyc 11 0.000 5 0.000












cellulose biosynthesis BioPath 10 0.016 2 0.118












gibberellic acid catabolism TAIR-GO 10 0.000 1 0.002












ammonia assimilation cycle AraCyc 10 0.000 1 0.011












glutamine biosynthesis I AraCyc 10 0.000 1 0.007












nitrate assimilation pathway AraCyc 10 0.000 1 0.014












polyisoprenoid biosynthesis AraCyc 10 0.000 2 0.002












lipid, fatty acid and isoprenoid metabolism FunCat 10 0.004 4 0.003












transport FunCat 10 0.000 3 0.000












Diterpenoid biosynthesis KEGG 10 0.000 1 0.012












Fructose and mannose metabolism KEGG 10 0.001 2 0.026












Peptidoglycan biosynthesis KEGG 10 0.000 1 0.002












Gibberellin metabolism LitPath 10 0.000 1 0.039












giberelin catabolism LitPath 10 0.000 1 0.000












prenyl diphosphate (GPP,FPP, GGPP) biosynthesis LitPath 10 0.000 1 0.031












cytokinin catabolism TAIR-GO 9 0.000 1 0.002












induced systemic resistance, jasmonic acid mediated signaling pathway TAIR-GO 9 0.000 1 0.000












jasmonic acid and ethylene-dependent systemic resistance TAIR-GO 9 0.000 1 0.000












jasmonic acid mediated signaling pathway TAIR-GO 9 0.000 1 0.000












photomorphogenesis TAIR-GO 9 0.000 1 0.001












protein amino acid adenylylation TAIR-GO 9 0.000 1 0.000












red, far-red light phototransduction TAIR-GO 9 0.000 1 0.000












response to jasmonic acid stimulus TAIR-GO 9 0.000 1 0.004












cytokinins degradation AraCyc 9 0.000 1 0.001












hemicellulose biosynthesis BioPath 8 0.001 1 0.067












ubiquinone biosynthesis BioPath 8 0 1 0












page created by Alexandre OLRY 04/26/06