| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP89A5 (At1g64950) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| There are no co-expressed pathways in the 2 data sets | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP89A5 (At1g64950) | |||||||||||||||
| max. difference between log2-ratios: | 5.3 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 3.0 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to organ heatmap | ||||||||||
| Glucosyltransferases for benzoic acids | BioPath | 10 | 0.000 | 1 | 0.000 |
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| Phenylpropanoid Metabolism | BioPath | 10 | 0.000 | 1 | 0.012 | |||||||||||
| cell plate formation (sensu Magnoliophyta) | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| ethylene biosynthesis | TAIR-GO | 9 | 0.000 | 1 | 0.000 | |||||||||||
| acrylonitrile degradation | AraCyc | 9 | 0.000 | 1 | 0.000 | |||||||||||
| aldoxime degradation | AraCyc | 9 | 0.000 | 1 | 0.000 | |||||||||||
| IAA biosynthesis | AraCyc | 9 | 0.000 | 1 | 0.000 | |||||||||||
| IAA biosynthesis I | AraCyc | 9 | 0.000 | 1 | 0.000 | |||||||||||
| nitrogen and sulfur utilization | FunCat | 9 | 0.000 | 1 | 0.000 | |||||||||||
| Benzoate degradation via CoA ligation | KEGG | 9 | 0.000 | 1 | 0.010 | |||||||||||
| Cyanoamino acid metabolism | KEGG | 9 | 0.000 | 1 | 0.001 | |||||||||||
| Nitrogen metabolism | KEGG | 9 | 0.000 | 1 | 0.001 | |||||||||||
| Tryptophan metabolism | KEGG | 9 | 0.000 | 1 | 0.002 | |||||||||||
| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP89A5 (At1g64950) | |||||||||||||||
| max. difference between log2-ratios: | 6.2 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.3 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to stress heatmap | ||||||||||
| Gluconeogenesis from lipids in seeds | BioPath | 14 | 0.000 | 2 | 0.001 |
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| Cell Wall Carbohydrate Metabolism | BioPath | 10 | 0.001 | 2 | 0.047 | |||||||||||
| fatty acid oxidation pathway | AraCyc | 10 | 0.000 | 1 | 0.002 | |||||||||||
| octane oxidation | AraCyc | 10 | 0.000 | 1 | 0.001 | |||||||||||
| Fatty acid metabolism | KEGG | 10 | 0.000 | 1 | 0.001 | |||||||||||
| Miscellaneous acyl lipid metabolism | AcylLipid | 10 | 0.000 | 1 | 0.072 | |||||||||||
| Glutathione metabolism | KEGG | 9 | 0.000 | 1 | 0.001 | |||||||||||
| C-compound and carbohydrate metabolism | FunCat | 8 | 0.000 | 2 | 0.002 | |||||||||||
| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP89A5 (At1g64950) | |||||||||||||||
| max. difference between log2-ratios: | 5.3 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.7 | |||||||||||||||
| Link to hormones etc. heatmap | ||||||||||||||||
| there are no co-expressed pathways with more than 6 annotation points |
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| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP89A5 (At1g64950) | |||||||||||||||
| max. difference between log2-ratios: | 4.4 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.0 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| there are no co-expressed pathways with more than 6 annotation points |
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| page created by Vincent Sauveplane | 07/07/06 | |||||||||||||||