| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP90B1, DWF4 (At3g50660) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| there are co-expressed pathways in the hormone data set only | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP90B1, DWF4 (At3g50660) | |||||||||||||||
| max. difference between log2-ratios: | 3.5 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.0 | |||||||||||||||
| Link to organ heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP90B1, DWF4 (At3g50660) | |||||||||||||||
| max. difference between log2-ratios: | 2.6 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.2 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP90B1, DWF4 (At3g50660) | |||||||||||||||
| max. difference between log2-ratios: | 3.1 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.5 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| triterpene, sterol, and brassinosteroid metabolism | LitPath | 10 | 0.000 | 1 | 0.001 | |||||||||||
| gamma-Hexachlorocyclohexane degradation | KEGG | 10 | 0.000 | 1 | 0.001 | |||||||||||
| Fluorene degradation | KEGG | 10 | 0.000 | 1 | 0.001 | |||||||||||
| Ascorbate and aldarate metabolism | KEGG | 10 | 0.000 | 1 | 0.002 | |||||||||||
| brassinosteroid biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria | BioPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| brassinosteroid biosynthesis | BioPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| brassinosteroid biosynthesis II | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| steroid biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| brassinosteroid biosynthesis I | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| auxin mediated signaling pathway | TAIR-GO | 7 | 0.000 | 1 | 0.000 | |||||||||||
| response to auxin stimulus | TAIR-GO | 7 | 0.000 | 1 | 0.001 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) | ||||||||||||||||
| max. difference between log2-ratios: | 2.8 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.3 | CYP90B1, DWF4 (At3g50660) | ||||||||||||||
| there are no co-expressed genes with r>0.5 |
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| Link to mutants heatmap | ||||||||||||||||
| page created by Juergen Ehlting | 06/09/06 | |||||||||||||||
