Co-Expression Analysis of: CYP90B1, DWF4 (At3g50660) Institut de Biologie Moléculaire des Plantes

































































































































































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Organ and Tissue Data Set view / save heatmap as: OpenOffice table annotation details for co-expressed genes can be found to the right of the heatmap
















































































































































































MS Excel table
















































































































































































save / view all data as: Tab delimited Table For further information on the experiments please go to the Genevestigator database using the experiment-ID given in brackets.













































































































































































shown are a maximum of 50 genes with r>0.5 (If more co-expressed genes with r>0.5 exist, they can be saved as Tab delimited data only) magnitude of change [log2(sample / average)]  0   0.3   0.6   0.9  1.2   1.5   1.8   2.1   2.4   2.7   >2.99 










































































































































































greater than zero                                                         










































































































































































less than zero                                                         










































































































































































Locus r-value Name Description suspension cell, aphidicolin, 0h ( 5) suspension cell, aphidicolin, 2h (5) suspension cell, aphidicolin, 4h (5) suspension cell, aphidicolin, 6h (5) suspension cell, aphidicolin, 8h (5) suspension cell, aphidicolin, 10h (5) suspension cell, aphidicolin, 12h (5) suspension cell, aphidicolin, 14h (5) suspension cell, aphidicolin, 16h (5) suspension cell, aphidicolin, 19h (5) suspension cell, sucrose, 0h (6) suspension cell, sucrose, 2h (6) suspension cell, sucrose, 4h (6) suspension cell, sucrose, 6h (6) suspension cell, sucrose, 8h (6) suspension cell, sucrose, 10h (6) suspension cell, sucrose, 12h (6) suspension cell, 1d (19) suspension cell, 1d (19) suspension cell, 5d (19) suspension cell, 7d (19) suspension cell, senescing (20) protoplast (62) suspension cell, light (153) suspension cell, dark (153) callus, transdifferentiation A1 (78) callus, transdifferentiation A2 (78) callus, transdifferentiation A3 (78) callus, transdifferentiation A4 (78) callus, transdifferentiation A5 (78) callus, transdifferentiation A6 (78) seedling (59) seedling (137) seedling (138) seedling (143) seedling (144) seedling, cont. light, 26h (149) seedling, cont. light, 26h (149) seedling, cont. light, 34h (149) seedling, cont. light, 38h (149) seedling, cont. light, 42h (149) seedling, cont. light, 46h (149) seedling, cont. light, 50h (149) seedling, cont. light, 54h (149) seedling, cont. light, 58h (149) seedling, cont. light, 62h (149) seedling, cont. light, 66h (149) seedling, cont. light, 70h (149) seedling, cont. light, 74h (149) seedling, far red then white light (83) seedling, dark then white light (83) Cotyledon (87) Hypocotyl (87) Hypocotyl (139) leaf, dedifferentiation A01 (50) leaf, dedifferentiation A02 (50) leaf, dedifferentiation A81 (50) leaf, dedifferentiation A82 (50) leaf, dedifferentiation A301 (50) leaf, dedifferentiation A302 (50) leaf, dedifferentiation A481 (50) leaf, dedifferentiation A482 (50) leaf, dedifferentiation B01 (50) leaf, dedifferentiation B02 (50) leaf, whole rosette, 0h (56) leaf, whole rosette, 0h (56) leaf, whole rosette, 2h (56) leaf, whole rosette, 4h (56) leaf, whole rosette, 8h (56) leaf, whole rosette, 12h (56) leaf, whole rosette, 13h (56) leaf, whole rosette, 14h (56) leaf, whole rosette, 16h (56) leaf, whole rosette, 20h (56) leaf, whole rosette, 24h (56) leaf, whole rosette, 0h (56) leaf, whole rosette, 4h (56) leaf, whole rosette, 8h (56) leaf, whole rosette, 12h (56) leaf, whole rosette, 16h (56) leaf, whole rosette, 20h (56) leaf, mature, high light (68) leaf, mature, low light (68) leaf stage 7, petiol (88) leaf stage 7, proximal half (88) leaf stage 7, distal half (88) guard cell enriched (11) senescing leaf, Col5 (60) senescing leaf, Col0 (60) senescing leaf (88) cauline leaf (88) roots (87) whole roots, A. halleri (101) whole roots, A. petrea (101) roots (141) mature roots (23) lateral roots (24) lateral roots (29) roots, axillary buds, dormant (30) roots, axillary buds, active (30) Roots, N03 depleted, dex treated (64) Roots, N03 depleted (64) root elongation zone (79) stem (80) stem (88) stem, base (66) stem, tip (66) stem, 1st node (88) stem, base, injured with needle (8) shoot apex (87) shoot apex (87) shoot apex (88) apical region, vegetative, Col (94) apical region, reproductive, 3d, Col (94) apical region, reproductive, 5d, Col (94) apical region, reproductive, 7d, Col (94) apical region, vegetative, Ler (94) apical region, reproductive, 3d, Ler (94) apical region, reproductive, 5d, Ler (94) apical region, reproductive, 7d, Ler (94) flower, stage 9 (89) flower, stage 10 (89) flower, stage 12 (89) flower, stage 15 (89) flower-silique, stage I (84) flower-silique, stage II (84) flower-silique, stage III (84) flower bud, young (9) flower bud, old (9) flower (80) flower (92) flower (100) sepal, stage 12 (89) sepal, stage 15 (89) petal, stage 12 (89) petal, stage 15 (89) stamen, stage 12 (89) stamen, stage 15 (89) carpel, stage 12 (89) carpel, stage 15 (89) pedicel, stage 15 (89) pollen, uninucleate microspores (22) pollen, bicellular (22) pollen, tricellular (22) pollen, mature (22) pollen (74) silique, young (136) silique, old (136) silique, stage 3 (90) silique, stage 4 (90) silique, stage 5 (90) seed, stage 6 (90) seed, stage 7 (90) seed, stage 8 (90) seed, stage 9 (90) seed, stage 10 (90) seed, dry (116) seed, dry (117) seed, fresh (96) seed, dormant (96) seed, imbibed, 1h (117) seed, imbibed, 3h (117) seed, imbibed, 22°C (118) seed, imbibed, far red, 22°C (132) seed, imbibed, 4°C (118) seed, imbibed, far red, 4°C (132) seed, imbibed (116) Locus Probeset Name Description Annotation score GO.keywords FunCat keywords AraCyc annotations KEGG annotations BioPath annotations AcylLipid category Literature annotations Gene family 90% quantile of DE max. DE
At3g50660 1.000 DWF4, CYP90B1 encodes a steroid 22 alpha hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced ferti -0.2 -0.73 -0.73 -0.73 -0.73 -0.73 -0.73 -0.73 -0.73 -0.73 -0.73 -0.73 0.48 -0.73 0.34 0.89 0.88 -0.73 -0.73 -0.73 -0.73 -0.77 -0.62 -0.31 -0.5 0.82 0.56 0.42 0.43 0.87 0.73 0.32 0.28 -0.56 1.09 -0.28 0.53 0.62 0.71 0.56 0.39 0.44 0.33 0.82 0.44 0.36 0.35 0.55 0.56 -0.11 0.61 -0.7 -0.33 0.34 -1.34 0.03 -0.66 -0.05 -0.08 -1.27 -0.62 -0.42 -0.74 0.27 0.06 0.13 -0.16 -0.21 -0.69 -0.42 -0.42 -0.36 -0.64 0.07 -0.1 -0.28 0.02 0.42 0.02 0.36 -0.31 -0.21 0.05 -0.37 0.38 0.61 0.27 -0.03 -0.19 -1.56 -0.89 1.11 0.07 1.01 0.63 1.31 -0.73 1.47 0.42 0.87 0.42 0.03 1.63 -0.2 -1.17 -0.73 0.24 -1.02 -0.73 -0.28 -0.33 0.16 0.65 0.41 -0.1 0.74 0.4 -0.01 0.04 0.06 -0.98 -1.03 -0.5 0.57 -0.04 0.24 1.01 0.19 0.59 0.93 -0.24 0.97 0.35 0.2 -0.13 1.58 0.96 0.64 -0.03 1.2 -0.43 -0.73 -0.73 -0.73 -0.73 -0.73 0.62 -0.73 1.94 0.1 -0.3 0.12 -0.24 0.41 -0.2 -0.01 -0.67 -0.92 0.18 1.05 -0.97 -1.12 0.14 0.14 0.13 0.22 1.02 At3g50660 252184_at DWF4, CYP90B1 encodes a steroid 22 alpha hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced ferti 10 steroid 22-alpha hydroxylase activity | brassinosteroid biosynthesis | unidimensional cell growth lipid, fatty acid and isoprenoid biosynthesis | isoprenoid biosynthesis | tetracyclic and pentacyclic triterpenes (cholesterin, steroids and hopanoids) biosynthesis | plant / fungal specific systemic sensing and response | plant hormonal regulation brassinosteroid biosynthesis II | brassinosteroid biosynthesis I
Isoprenoid Biosynthesis in the Cytosol and in Mitochondria | brassinosteroid biosynthesis
triterpene, sterol, and brassinosteroid metabolism | brassinosteroid biosynthesis cytochrome P450 family, 22alpha-hydroxylase for 6-oxo-campestanol, brassinolide biosynthesis 2.00 3.51


























































































































































































page created by Juergen Ehlting 06/09/06