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| Pathways co-expressed in the 3 applicable data sets (with more than 6 annotation points each) |
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Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. |
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| Pathway |
Source |
Sum of scores |
Sum of genes |
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| jasmonic acid biosynthesis |
TAIR-GO |
188 |
26 |
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| jasmonic acid biosynthesis |
TAIR-GO |
188 |
26 |
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| Lipid signaling |
AcylLipid |
104 |
14 |
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| response to wounding |
TAIR-GO |
90 |
12 |
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To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. |
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| lipoxygenase pathway |
AraCyc |
74 |
11 |
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For more information on how these pathway maps were generated please read the methods page |
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| Pathways co-expressed in the Stress data set ( with more than 10 annotation points) |
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CYP94B1 (At5g63450) |
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| max. difference between log2-ratios: |
6.6 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
2.8 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to stress heatmap |
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| jasmonic acid biosynthesis |
TAIR-GO |
22 |
0.000 |
3 |
0.000 |
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| jasmonic acid biosynthesis |
AraCyc |
22 |
0.000 |
3 |
0.000 |
| Lipid signaling |
AcylLipid |
22 |
0.000 |
3 |
0.037 |
| response to wounding |
TAIR-GO |
16 |
0.000 |
2 |
0.000 |
| lipid, fatty acid and isoprenoid metabolism |
FunCat |
14 |
0.000 |
2 |
0.000 |
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| lipoxygenase pathway |
AraCyc |
12 |
0.000 |
2 |
0.000 |
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| Cell Wall Carbohydrate Metabolism |
BioPath |
10 |
0.002 |
1 |
0.168 |
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| cellulose biosynthesis |
BioPath |
10 |
0.000 |
1 |
0.004 |
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| Leaf Glycerolipid Biosynthesis |
BioPath |
10 |
0.000 |
1 |
0.054 |
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| Leaf Glycerolipid Biosynthesis in Plastid |
BioPath |
10 |
0.000 |
1 |
0.006 |
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| chloroplast envelope |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| galactolipid biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| glycolipid biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| lipid biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| cellulose biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.003 |
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| glycosylglyceride biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.000 |
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| Synthesis of membrane lipids in plastids |
AcylLipid |
10 |
0.000 |
1 |
0.018 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) |
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CYP94B1 (At5g63450) |
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| max. difference between log2-ratios: |
7.7 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
2.6 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to hormones etc. heatmap |
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| Lipid signaling |
AcylLipid |
46 |
0.000 |
6 |
0.001 |
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| jasmonic acid biosynthesis |
TAIR-GO |
36 |
0.000 |
5 |
0.000 |
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| jasmonic acid biosynthesis |
AraCyc |
36 |
0.000 |
5 |
0.000 |
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| lipoxygenase pathway |
AraCyc |
36 |
0.000 |
5 |
0.000 |
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| response to wounding |
TAIR-GO |
30 |
0.000 |
4 |
0.000 |
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| Isoprenoid Biosynthesis in the Cytosol and in Mitochondria |
BioPath |
20 |
0.000 |
2 |
0.011 |
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| oxylipin pathway |
LitPath |
20 |
0.000 |
2 |
0.000 |
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| defense response |
TAIR-GO |
17 |
0.000 |
3 |
0.000 |
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| transport |
FunCat |
13 |
0.000 |
3 |
0.000 |
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| transport facilitation |
FunCat |
13 |
0.000 |
3 |
0.000 |
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| transport ATPases |
FunCat |
11 |
0.000 |
2 |
0.002 |
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| Glutathione metabolism |
KEGG |
11 |
0.000 |
2 |
0.001 |
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| Biosynthesis of prenyl diphosphates |
BioPath |
10 |
0.000 |
1 |
0.042 |
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| Chlorophyll biosynthesis and breakdown |
BioPath |
10 |
0.000 |
1 |
0.025 |
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| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) |
BioPath |
10 |
0.007 |
1 |
0.128 |
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| sterol biosynthesis |
BioPath |
10 |
0.000 |
1 |
0.016 |
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| sucrose metabolism |
BioPath |
10 |
0.000 |
1 |
0.009 |
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| chlorophyll catabolism |
TAIR-GO |
10 |
0.000 |
1 |
0.001 |
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| growth |
TAIR-GO |
10 |
0.000 |
2 |
0.003 |
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| response to jasmonic acid stimulus |
TAIR-GO |
10 |
0.000 |
1 |
0.003 |
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| response to stress |
TAIR-GO |
10 |
0.000 |
1 |
0.001 |
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| sterol biosynthesis |
TAIR-GO |
10 |
0.000 |
1 |
0.028 |
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| sterol biosynthesis |
AraCyc |
10 |
0.000 |
1 |
0.011 |
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| glycolysis and gluconeogenesis |
FunCat |
10 |
0.002 |
1 |
0.213 |
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| lipid, fatty acid and isoprenoid metabolism |
FunCat |
10 |
0.000 |
1 |
0.036 |
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| Fatty acid metabolism |
KEGG |
10 |
0.000 |
1 |
0.010 |
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| Galactose metabolism |
KEGG |
10 |
0.000 |
1 |
0.009 |
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| gamma-Hexachlorocyclohexane degradation |
KEGG |
10 |
0.000 |
1 |
0.003 |
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| Starch and sucrose metabolism |
KEGG |
10 |
0.000 |
1 |
0.046 |
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| Tryptophan metabolism |
KEGG |
10 |
0.000 |
1 |
0.010 |
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| brassinosteroid biosynthesis |
LitPath |
10 |
0.001 |
1 |
0.084 |
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| chlorophyll and phytochromobilin metabolism |
LitPath |
10 |
0.038 |
1 |
0.180 |
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| chlorophyll catabolism |
LitPath |
10 |
0.000 |
1 |
0.002 |
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| prenyl diphosphate (GPP,FPP, GGPP) biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.046 |
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| sterol and brassinosteroid biosynthesis |
LitPath |
10 |
0.000 |
1 |
0.046 |
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| salicylic acid biosynthesis |
TAIR-GO |
7 |
0.000 |
1 |
0.000 |
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| Oxidative phosphorylation |
KEGG |
7 |
0.000 |
1 |
0.044 |
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| Pathways co-expressed in the Mutant data set (with more than 10 annotation points) |
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CYP94B1 (At5g63450) |
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| max. difference between log2-ratios: |
6.0 |
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| max. difference between log2-ratios excluding lowest and highest 5%: |
2.5 |
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| Pathway |
Source |
Scores of Genes |
p[Score] |
No. of Genes |
p[genes] |
Link to mutants heatmap |
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| response to wounding |
TAIR-GO |
44 |
0.000 |
6 |
0.000 |
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| jasmonic acid biosynthesis |
TAIR-GO |
36 |
0.000 |
5 |
0.000 |
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| jasmonic acid biosynthesis |
AraCyc |
36 |
0.000 |
5 |
0.000 |
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| Lipid signaling |
AcylLipid |
36 |
0.000 |
5 |
0.019 |
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| Phenylpropanoid Metabolism |
BioPath |
26 |
0.000 |
4 |
0.000 |
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| lipoxygenase pathway |
AraCyc |
26 |
0.000 |
4 |
0.000 |
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| Aromatic amino acid (Phe, Tyr, Trp) metabolism |
BioPath |
24 |
0.000 |
3 |
0.000 |
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| tryptophan biosynthesis |
TAIR-GO |
24 |
0.000 |
3 |
0.000 |
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| tryptophan biosynthesis |
AraCyc |
24 |
0.000 |
3 |
0.000 |
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| Shikimate pathway |
LitPath |
24 |
0.000 |
3 |
0.003 |
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| Trp biosyntesis |
LitPath |
24 |
0.000 |
3 |
0.000 |
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| Phenylalanine, tyrosine and tryptophan biosynthesis |
KEGG |
20 |
0.000 |
2 |
0.000 |
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| response to pathogenic bacteria |
TAIR-GO |
14 |
0.000 |
2 |
0.000 |
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| anthranilate synthase complex |
TAIR-GO |
10 |
0.000 |
1 |
0.000 |
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| defense response |
TAIR-GO |
10 |
0.000 |
2 |
0.002 |
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| growth |
TAIR-GO |
10 |
0.000 |
2 |
0.003 |
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| response to jasmonic acid stimulus |
TAIR-GO |
10 |
0.000 |
1 |
0.003 |
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| oxylipin pathway |
LitPath |
10 |
0.000 |
1 |
0.000 |
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