Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP96A5 (At2g21910) save all data as Tab Delimited Table










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Pathways co-expressed in the 2 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.







Pathway Source Sum of scores Sum of genes







Biosynthesis of Amino Acids and Derivatives BioPath 70 12







Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 50 8







Benzoate degradation via CoA ligation KEGG 39 15







Inositol phosphate metabolism KEGG 39 15
To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.








Nicotinate and nicotinamide metabolism KEGG 39 15









nucleotide metabolism FunCat 24 3









methionine biosynthesis II AraCyc 19 2
For more information on how these pathway maps were generated please read the methods page
























































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP96A5 (At2g21910)







max. difference between log2-ratios: 1.7











max. difference between log2-ratios excluding lowest and highest 5%: 0.0

















Link to organ heatmap






there are no co-expressed genes with more than 6 annotation points












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP96A5 (At2g21910)







max. difference between log2-ratios: 2.5











max. difference between log2-ratios excluding lowest and highest 5%: 0.5

















Link to stress heatmap






there are no co-expressed genes with r>0.5



















































Pathways co-expressed in the Hormone etc. data set (with more than 10 annotation points)
CYP96A5 (At2g21910)







max. difference between log2-ratios: 4.0











max. difference between log2-ratios excluding lowest and highest 5%: 1.4











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






C-compound and carbohydrate metabolism FunCat 20 0.000 4 0.054










Biosynthesis of Amino Acids and Derivatives BioPath 18 0.000 4 0.002




Benzoate degradation via CoA ligation KEGG 18 0.000 8 0.000



Inositol phosphate metabolism KEGG 18 0.000 8 0.000



Nicotinate and nicotinamide metabolism KEGG 18 0.000 8 0.000



Intermediary Carbon Metabolism BioPath 16 0.000 3 0.010



Glycolysis / Gluconeogenesis KEGG 16 0.000 3 0.012



nucleotide metabolism FunCat 15 0.000 2 0.000



purine nucleotide metabolism FunCat 15 0.000 2 0.001



allantoin degradation AraCyc 12 0.000 2 0.000



isoleucine biosynthesis I AraCyc 12 0.000 2 0.000










leucine biosynthesis AraCyc 12 0.000 2 0.000










trans-zeatin biosynthesis AraCyc 12 0.000 2 0.000










valine biosynthesis AraCyc 12 0.000 2 0.000










fermentation FunCat 12 0.000 2 0.000










Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 10 0.000 2 0.001










methionine biosynthesis II AraCyc 9 0.000 1 0.002










threonine biosynthesis from homoserine AraCyc 9 0.000 1 0.000










amino acid metabolism FunCat 9 0.025 1 0.199










pyrimidine nucleotide metabolism FunCat 9 0.000 1 0.008










Glutathione metabolism BioPath 8 0.000 2 0.006










glycolysis and gluconeogenesis FunCat 8 0.032 2 0.065





























































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP96A5 (At2g21910)







max. difference between log2-ratios: 5.9











max. difference between log2-ratios excluding lowest and highest 5%: 0.3











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






Phenylpropanoid Metabolism BioPath 68 0.000 10 0.002



Biosynthesis of Amino Acids and Derivatives BioPath 52 0.000 8 0.015


Shikimate pathway LitPath 48 0.000 7 0.000


Phenylpropanoid pathway LitPath 46 0.000 8 0.009


tryptophan biosynthesis TAIR-GO 44 0.000 6 0.000


tryptophan biosynthesis AraCyc 44 0.000 6 0.000


Trp biosyntesis LitPath 44 0.000 6 0.000


Aromatic amino acid (Phe, Tyr, Trp) metabolism BioPath 42 0.000 6 0.000


Methionin/SAM/ethylene metabolism from cysteine and aspartate BioPath 40 0.000 6 0.000


response to pathogenic bacteria TAIR-GO 34 0.000 5 0.000


Lipid signaling AcylLipid 34 0.002 11 0.019


lignin biosynthesis AraCyc 30 0.000 5 0.000


core phenylpropanoid metabolism BioPath 26 0.000 4 0.004


secondary metabolism FunCat 26 0.000 5 0.002










Propanoate metabolism KEGG 26 0.000 4 0.001










biosynthesis of proto- and siroheme AraCyc 24 0.000 3 0.014










biogenesis of chloroplast FunCat 24 0.000 3 0.043










Phenylalanine, tyrosine and tryptophan biosynthesis KEGG 22 0.000 3 0.027










Benzoate degradation via CoA ligation KEGG 21 0.000 7 0.002










Inositol phosphate metabolism KEGG 21 0.000 7 0.004










Nicotinate and nicotinamide metabolism KEGG 21 0.000 7 0.001










Chlorophyll biosynthesis and breakdown BioPath 20 0.000 2 0.042










ethylene biosynthesis TAIR-GO 20 0.000 3 0.000










Porphyrin and chlorophyll metabolism KEGG 20 0.000 2 0.034










chlorophyll and phytochromobilin metabolism LitPath 20 0.029 2 0.212



























page created by Alexandre OLRY 05/02/06