Co-Expression Analysis of:	CYPedia Home					Institut de Biologie Moléculaire des Plantes (Home)
CYP96A9 (At4g39480)	save all data as Tab Delimited Table
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Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)					Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.
There are no pathways co-expressed in the 3 data sets
					To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.
					For more information on how these pathway maps were generated please read the methods page
Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)						CYP96A9 (At4g39480)
max. difference between log2-ratios:				8.0
max. difference between log2-ratios excluding lowest and highest 5%:				4.9
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to organ heatmap
mono-/sesqui-/di-terpene biosynthesis	LitPath	40	0.000	4	0.000
terpenoid metabolism	LitPath	40	0.000	4	0.001
Cell Wall Carbohydrate Metabolism	BioPath	30.5	0.000	5	0.040
pectin metabolism	BioPath	30.5	0.000	5	0.001
Fatty acid elongation and wax and cutin metabolism	AcylLipid	24	0.000	4	0.007
Starch and sucrose metabolism	KEGG	20	0.000	2	0.000
fatty acid metabolism	TAIR-GO	18	0.000	2	0.000
Synthesis of membrane lipids in endomembrane system	AcylLipid	11	0.012	3	0.022
Gluconeogenesis from lipids in seeds	BioPath	10	0.000	1	0.100
monoterpenoid biosynthesis	TAIR-GO	10	0.000	1	0.000
pentacyclic triterpenoid biosynthesis	TAIR-GO	10	0.000	1	0.001
fatty acid oxidation pathway	AraCyc	10	0.000	1	0.002
monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
octane oxidation	AraCyc	10	0.000	1	0.000
plant monoterpene biosynthesis	AraCyc	10	0.000	1	0.000
Biosynthesis of steroids	KEGG	10	0.000	1	0.004
monoterpene biosynthesis	LitPath	10	0.000	1	0.005
sequiterpene biosynthesis	LitPath	10	0.000	1	0.001
triterpene biosynthesis	LitPath	10	0.000	1	0.021
cuticle biosynthesis	TAIR-GO	7	0.000	1	0.002
wax biosynthesis	TAIR-GO	7	0.000	1	0.000
epicuticular wax biosynthesis	AraCyc	7	0.000	1	0.000
Pathways co-expressed in the Stress data set ( with more than 6 annotation points)						CYP96A9 (At4g39480)
max. difference between log2-ratios:				3.1
max. difference between log2-ratios excluding lowest and highest 5%:				0.9
						Link to stress heatmap
There are no co-expressed pathways with r-value greater than 0.5 in this data set
Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)						CYP96A9 (At4g39480)
max. difference between log2-ratios:				3.3
max. difference between log2-ratios excluding lowest and highest 5%:				1.5
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to hormones etc. heatmap
pentacyclic triterpenoid biosynthesis	TAIR-GO	10	0.000	1	0.000
Biosynthesis of steroids	KEGG	10	0.000	1	0.000
triterpene biosynthesis	LitPath	10	0.000	1	0.000
triterpene, sterol, and brassinosteroid metabolism	LitPath	10	0.000	1	0.010
Pathways co-expressed in the Mutant data set (with more than 6 annotation points)						CYP96A9 (At4g39480)
max. difference between log2-ratios:				6.0
max. difference between log2-ratios excluding lowest and highest 5%:				2.3
Pathway	Source	Scores of Genes	p[Score]	No. of Genes	p[genes]	Link to mutants heatmap
fatty acid beta oxidation complex	BioPath	7	0.000	1	0.002
Gluconeogenesis from lipids in seeds	BioPath	7	0.000	1	0.016
fatty acid beta-oxidation	TAIR-GO	7	0.000	1	0.000
fatty acid oxidation pathway	AraCyc	7	0.000	1	0.001
isoleucine degradation I	AraCyc	7	0.000	1	0.002
isoleucine degradation III	AraCyc	7	0.000	1	0.000
leucine degradation I	AraCyc	7	0.000	1	0.002
leucine degradation II	AraCyc	7	0.000	1	0.000
valine degradation I	AraCyc	7	0.000	1	0.003
valine degradation II	AraCyc	7	0.000	1	0.001
Degradation of storage lipids and straight fatty acids	AcylLipid	7	0.000	1	0.006
page created by Alexandre OLRY	05/02/06