Co-Expression Analysis of: CYPedia Home Institut de Biologie Moléculaire des Plantes (Home)




CYP96A9 (At4g39480) save all data as Tab Delimited Table










_________________________________________















Pathways co-expressed in the 3 data sets with co-expressed pathways (with more than 6 annotation points each)
Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above.



















There are no pathways co-expressed in the 3 data sets




































To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes.









































For more information on how these pathway maps were generated please read the methods page
























































Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points)
CYP96A9 (At4g39480)







max. difference between log2-ratios: 8.0











max. difference between log2-ratios excluding lowest and highest 5%: 4.9











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to organ heatmap






mono-/sesqui-/di-terpene biosynthesis LitPath 40 0.000 4 0.000


terpenoid metabolism LitPath 40 0.000 4 0.001

Cell Wall Carbohydrate Metabolism BioPath 30.5 0.000 5 0.040

pectin metabolism BioPath 30.5 0.000 5 0.001

Fatty acid elongation and wax and cutin metabolism AcylLipid 24 0.000 4 0.007

Starch and sucrose metabolism KEGG 20 0.000 2 0.000

fatty acid metabolism TAIR-GO 18 0.000 2 0.000

Synthesis of membrane lipids in endomembrane system AcylLipid 11 0.012 3 0.022

Gluconeogenesis from lipids in seeds BioPath 10 0.000 1 0.100

monoterpenoid biosynthesis TAIR-GO 10 0.000 1 0.000

pentacyclic triterpenoid biosynthesis TAIR-GO 10 0.000 1 0.001

fatty acid oxidation pathway AraCyc 10 0.000 1 0.002

monoterpene biosynthesis AraCyc 10 0.000 1 0.000










octane oxidation AraCyc 10 0.000 1 0.000










plant monoterpene biosynthesis AraCyc 10 0.000 1 0.000










Biosynthesis of steroids KEGG 10 0.000 1 0.004










monoterpene biosynthesis LitPath 10 0.000 1 0.005










sequiterpene biosynthesis LitPath 10 0.000 1 0.001










triterpene biosynthesis LitPath 10 0.000 1 0.021










cuticle biosynthesis TAIR-GO 7 0.000 1 0.002










wax biosynthesis TAIR-GO 7 0.000 1 0.000










epicuticular wax biosynthesis AraCyc 7 0.000 1 0.000












































Pathways co-expressed in the Stress data set ( with more than 6 annotation points)
CYP96A9 (At4g39480)







max. difference between log2-ratios: 3.1











max. difference between log2-ratios excluding lowest and highest 5%: 0.9

















Link to stress heatmap






There are no co-expressed pathways with r-value greater than 0.5 in this data set



















































Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points)
CYP96A9 (At4g39480)







max. difference between log2-ratios: 3.3











max. difference between log2-ratios excluding lowest and highest 5%: 1.5











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to hormones etc. heatmap






pentacyclic triterpenoid biosynthesis TAIR-GO 10 0.000 1 0.000





Biosynthesis of steroids KEGG 10 0.000 1 0.000




triterpene biosynthesis LitPath 10 0.000 1 0.000










triterpene, sterol, and brassinosteroid metabolism LitPath 10 0.000 1 0.010





























































Pathways co-expressed in the Mutant data set (with more than 6 annotation points)
CYP96A9 (At4g39480)







max. difference between log2-ratios: 6.0











max. difference between log2-ratios excluding lowest and highest 5%: 2.3











Pathway Source Scores of Genes p[Score] No. of Genes p[genes] Link to mutants heatmap






fatty acid beta oxidation complex BioPath 7 0.000 1 0.002



Gluconeogenesis from lipids in seeds BioPath 7 0.000 1 0.016


fatty acid beta-oxidation TAIR-GO 7 0.000 1 0.000


fatty acid oxidation pathway AraCyc 7 0.000 1 0.001


isoleucine degradation I AraCyc 7 0.000 1 0.002










isoleucine degradation III AraCyc 7 0.000 1 0.000










leucine degradation I AraCyc 7 0.000 1 0.002










leucine degradation II AraCyc 7 0.000 1 0.000










valine degradation I AraCyc 7 0.000 1 0.003










valine degradation II AraCyc 7 0.000 1 0.001










Degradation of storage lipids and straight fatty acids AcylLipid 7 0.000 1 0.006



























page created by Alexandre OLRY 05/02/06