| Co-Expression Analysis of: | CYP98A3 (At2g4089) | Institut de Biologie Moléculaire des Plantes |
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| Organ and Tissue Data Set | view / save heatmap as: | OpenOffice table | annotation details for co-expressed genes can be found to the right of the heatmap | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| last updated: | 31/01/06 | MS Excel table | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| magnitude of change | 0 | 0.3 | 0.6 | 0.9 | 1.2 | 1.5 | 1.8 | 2.1 | 2.4 | 2.7 | >2.99 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| greater than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| less than zero | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Locus | r-value | Name | Description | suspension cell, aphidicolin, 0h ( 5) | suspension cell, aphidicolin, 2h (5) | suspension cell, aphidicolin, 4h (5) | suspension cell, aphidicolin, 6h (5) | suspension cell, aphidicolin, 8h (5) | suspension cell, aphidicolin, 10h (5) | suspension cell, aphidicolin, 12h (5) | suspension cell, aphidicolin, 14h (5) | suspension cell, aphidicolin, 16h (5) | suspension cell, aphidicolin, 19h (5) | suspension cell, sucrose, 0h (6) | suspension cell, sucrose, 2h (6) | suspension cell, sucrose, 4h (6) | suspension cell, sucrose, 6h (6) | suspension cell, sucrose, 8h (6) | suspension cell, sucrose, 10h (6) | suspension cell, sucrose, 12h (6) | suspension cell, 1d (19) | suspension cell, 1d (19) | suspension cell, 5d (19) | suspension cell, 7d (19) | suspension cell, senescing (20) | protoplast (62) | suspension cell, light (153) | suspension cell, dark (153) | callus, transdifferentiation A1 (78) | callus, transdifferentiation A2 (78) | callus, transdifferentiation A3 (78) | callus, transdifferentiation A4 (78) | callus, transdifferentiation A5 (78) | callus, transdifferentiation A6 (78) | seedling (59) | seedling (137) | seedling (138) | seedling (143) | seedling (144) | seedling, cont. light, 26h (149) | seedling, cont. light, 26h (149) | seedling, cont. light, 34h (149) | seedling, cont. light, 38h (149) | seedling, cont. light, 42h (149) | seedling, cont. light, 46h (149) | seedling, cont. light, 50h (149) | seedling, cont. light, 54h (149) | seedling, cont. light, 58h (149) | seedling, cont. light, 62h (149) | seedling, cont. light, 66h (149) | seedling, cont. light, 70h (149) | seedling, cont. light, 74h (149) | seedling, far red then white light (83) | seedling, dark then white light (83) | Cotyledon (87) | Hypocotyl (87) | Hypocotyl (139) | leaf, dedifferentiation A01 (50) | leaf, dedifferentiation A02 (50) | leaf, dedifferentiation A81 (50) | leaf, dedifferentiation A82 (50) | leaf, dedifferentiation A301 (50) | leaf, dedifferentiation A302 (50) | leaf, dedifferentiation A481 (50) | leaf, dedifferentiation A482 (50) | leaf, dedifferentiation B01 (50) | leaf, dedifferentiation B02 (50) | leaf, whole rosette, 0h (56) | leaf, whole rosette, 0h (56) | leaf, whole rosette, 2h (56) | leaf, whole rosette, 4h (56) | leaf, whole rosette, 8h (56) | leaf, whole rosette, 12h (56) | leaf, whole rosette, 13h (56) | leaf, whole rosette, 14h (56) | leaf, whole rosette, 16h (56) | leaf, whole rosette, 20h (56) | leaf, whole rosette, 24h (56) | leaf, whole rosette, 0h (56) | leaf, whole rosette, 4h (56) | leaf, whole rosette, 8h (56) | leaf, whole rosette, 12h (56) | leaf, whole rosette, 16h (56) | leaf, whole rosette, 20h (56) | leaf, mature, high light (68) | leaf, mature, low light (68) | leaf stage 7, petiol (88) | leaf stage 7, proximal half (88) | leaf stage 7, distal half (88) | guard cell enriched (11) | senescing leaf, Col5 (60) | senescing leaf, Col0 (60) | senescing leaf (88) | cauline leaf (88) | roots (87) | whole roots, A. halleri (101) | whole roots, A. petrea (101) | roots (141) | mature roots (23) | lateral roots (24) | lateral roots (29) | roots, axillary buds, dormant (30) | roots, axillary buds, active (30) | Roots, N03 depleted, dex treated (64) | Roots, N03 depleted (64) | root elongation zone (79) | stem (80) | stem (88) | stem, base (66) | stem, tip (66) | stem, 1st node (88) | stem, base, injured with needle (8) | shoot apex (87) | shoot apex (87) | shoot apex (88) | apical region, vegetative, Col (94) | apical region, reproductive, 3d, Col (94) | apical region, reproductive, 5d, Col (94) | apical region, reproductive, 7d, Col (94) | apical region, vegetative, Ler (94) | apical region, reproductive, 3d, Ler (94) | apical region, reproductive, 5d, Ler (94) | apical region, reproductive, 7d, Ler (94) | flower, stage 9 (89) | flower, stage 10 (89) | flower, stage 12 (89) | flower, stage 15 (89) | flower-silique, stage I (84) | flower-silique, stage II (84) | flower-silique, stage III (84) | flower bud, young (9) | flower bud, old (9) | flower (80) | flower (92) | flower (100) | sepal, stage 12 (89) | sepal, stage 15 (89) | petal, stage 12 (89) | petal, stage 15 (89) | stamen, stage 12 (89) | stamen, stage 15 (89) | carpel, stage 12 (89) | carpel, stage 15 (89) | pedicel, stage 15 (89) | pollen, uninucleate microspores (22) | pollen, bicellular (22) | pollen, tricellular (22) | pollen, mature (22) | pollen (74) | silique, young (136) | silique, old (136) | silique, stage 3 (90) | silique, stage 4 (90) | silique, stage 5 (90) | seed, stage 6 (90) | seed, stage 7 (90) | seed, stage 8 (90) | seed, stage 9 (90) | seed, stage 10 (90) | seed, dry (116) | seed, dry (117) | seed, fresh (96) | seed, dormant (96) | seed, imbibed, 1h (117) | seed, imbibed, 3h (117) | seed, imbibed, 22°C (118) | seed, imbibed, far red, 22°C (132) | seed, imbibed, 4°C (118) | seed, imbibed, far red, 4°C (132) | seed, imbibed (116) | Locus | Probeset | Name | Description | Annotation score | GO.keywords | FunCat keywords | AraCyc annotations | KEGG annotations | BioPath annotations | AcylLipid category | Literature annotations | Gene family | 90% quantile of DE | max. DE |
| At2g40890 | 1.000 | C3'H, CYP98A3 | encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis. | -0.47 | 1.93 | 1.31 | 0.26 | -0.25 | -0.59 | -0.56 | -0.69 | -0.52 | -0.99 | 1.37 | 2.54 | 2.16 | 1.81 | 1.35 | 0.46 | -1.08 | -1.49 | -1.01 | -0.61 | 0.61 | 0.13 | 1.99 | 0.72 | 0.06 | 0.52 | -0.35 | -0.54 | -0.08 | -0.57 | -0.65 | 0.73 | 0.2 | 0.84 | 0.64 | 0.11 | 0.55 | 0.5 | 0.1 | 0.3 | 0.43 | 0.49 | 0.3 | 0.22 | 0.03 | 0.19 | 0.38 | 0.18 | 0.48 | 0.7 | 0.64 | -0.92 | 0.11 | -0.52 | 0.35 | -0.45 | 0.08 | 0.54 | -0.36 | -0.47 | 0.64 | 0.83 | 1.23 | 1.12 | -0.98 | -1.15 | -0.76 | -0.54 | -0.5 | -0.28 | -0.62 | -0.43 | -0.75 | -0.82 | -1.1 | 0.21 | -0.37 | -0.77 | -0.9 | -0.3 | -0.17 | -0.78 | -0.54 | -0.88 | -1.38 | -1.48 | -0.21 | -1.12 | -0.79 | -0.91 | -0.88 | 0.41 | 1.3 | 0.95 | 1.29 | 1.51 | 0.17 | 2.27 | -0.61 | -0.21 | 1.8 | 1.89 | 2.2 | 1.42 | 2 | 2.2 | 0.09 | 1.42 | 0.7 | -0.7 | -0.46 | -0.19 | -0.83 | -0.66 | -0.8 | -0.74 | -0.25 | -0.28 | -0.31 | -0.3 | -0.5 | -0.84 | -0.15 | -1.34 | -0.25 | -1.19 | -0.55 | -0.15 | -0.54 | -0.85 | -0.5 | -0.69 | -0.68 | -0.43 | -1.48 | -2.27 | 0.54 | -2.61 | -1.47 | -1.27 | -0.5 | -1.18 | -1.18 | -1.18 | -1.18 | -1.18 | 0.49 | -0.24 | -1.01 | 0.35 | 0.15 | 0.47 | 0.84 | 1.31 | 1.39 | 1.4 | 1 | 1.11 | 0.52 | -0.19 | 1.19 | 1.63 | 0.46 | 0.46 | -0.12 | -0.23 | -0.41 | At2g40890 | 245101_at | C3'H, CYP98A3 | encodes coumarate 3-hydroxylase (C3H), a P450-dependent monooxygenase. Involved in lignin biosynthesis. | 10 | p-coumarate 3-hydroxylase activity | monooxygenase activity | phenylpropanoid biosynthesis | lignin biosynthesis | suberin biosynthesis | lignin biosynthesis | phenylpropanoid biosynthesis | Ascorbate and aldarate metabolism | Stilbene, coumarine and lignin biosynthesis | gamma-Hexachlorocyclohexane degradation | Fluorene degradation | Phenylpropanoid Metabolism | core phenylpropanoid metabolism | Phenylpropanoid pathway | cytochrome P450 family, 3’-hydroxylase for p-coumaryl shikimic/quinic acids, phenylpropanoid metabolism | 3.11 | 5.16 | ||
| At2g30490 | 0.690 | C4H, CYP73A5 | trans-cinnamate 4-monooxygenase / cinnamic acid 4-hydroxylase (C4H) (CA4H) / cytochrome P450 73 (CYP73A5) | 0.25 | 2.23 | 1.78 | -0.16 | -0.72 | -0.49 | -0.38 | 0.02 | -0.15 | -0.67 | 1.34 | 2.48 | 2.1 | 1.91 | 0.91 | 0.45 | -0.85 | -1.48 | 0.47 | 1.35 | 2.19 | 0.01 | 2.58 | 0.78 | -0.03 | 1.4 | 0.97 | 1.24 | 1.34 | 1.06 | 1.05 | 0.78 | 1.08 | 1.18 | 0.33 | 0.62 | 0.69 | 0.48 | -0.46 | 0.37 | 0.7 | 0.86 | 0.62 | 0.37 | -0.07 | 0.35 | 0.8 | 0.7 | 0.83 | 0.87 | 0.51 | -1.06 | 0.45 | -0.52 | -0.12 | -1.04 | 1.77 | 1.11 | 0.81 | 0 | 1.12 | 1.26 | 2.27 | 2.22 | -1.13 | -0.97 | -0.84 | -0.81 | -1.02 | -0.76 | -0.36 | 0.25 | -0.55 | -1.62 | -1.31 | 0.65 | -0.34 | -1.06 | -0.21 | -0.09 | -0.17 | -0.24 | -0.5 | -0.97 | -1.62 | -1.61 | -0.65 | -0.99 | -0.99 | -1.06 | -1.75 | 0.92 | 1.84 | 0.87 | 1.82 | 1.52 | 0.45 | 2.18 | -0.65 | -0.9 | 2.27 | 2.16 | 2.04 | 0.98 | 2.1 | 2.5 | -0.12 | 1.1 | 1.29 | -0.28 | -0.31 | 0.09 | -0.27 | 0.11 | -0.05 | 0.17 | -0.26 | -0.24 | -0.4 | -0.39 | 0.19 | 0.19 | 0.31 | -0.82 | 0.42 | -0.55 | 0.57 | -0.1 | -0.6 | -1.17 | 0.09 | -0.98 | -0.97 | -0.1 | 0.53 | -2.76 | 0.03 | -2.6 | -0.27 | -0.56 | -0.71 | -3.51 | -3.51 | -3.51 | -3.51 | -3.51 | 0.75 | -1.55 | 0.14 | 0.35 | -0.39 | -0.52 | -0.14 | -0.28 | -0.24 | -0.44 | -1.71 | -1.69 | 0.14 | -1.38 | -1.83 | -1.19 | -0.85 | -0.85 | -0.81 | -1.5 | -1.25 | At2g30490 | 267470_at | C4H, CYP73A5 | trans-cinnamate 4-monooxygenase / cinnamic acid 4-hydroxylase (C4H) (CA4H) / cytochrome P450 73 (CYP73A5) | 10 | trans-cinnamate 4-monooxygenase activity | response to light | response to wounding | phenylpropanoid biosynthesis | suberin biosynthesis | lignin biosynthesis | phenylpropanoid pathway, initial reactions | Phenylalanine metabolism | Stilbene, coumarine and lignin biosynthesis | Phenylpropanoid Metabolism | core phenylpropanoid metabolism | Phenylpropanoid pathway | cytochrome P450 family, cinnamic acid 4-hydroxylase, phenylpropanoid metabolism | 3.91 | 6.09 | ||
| At3g21240 | 0.650 | 4CL2 | encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it does NOT convert ferulate. | -0.96 | -0.36 | -0.96 | -0.96 | -0.96 | -0.96 | -0.96 | -0.96 | -0.96 | -0.96 | -0.04 | 2.54 | 1.78 | 1.39 | 0.33 | -0.99 | -0.96 | -0.96 | -0.96 | -0.96 | -0.96 | -0.96 | 1.37 | 0.36 | -1.72 | 1.05 | -0.15 | -0.96 | 0.71 | 0.39 | 0.2 | 0.77 | 1.34 | -0.02 | 0.57 | 0.68 | 0.92 | 0.67 | 0.72 | 0.75 | 0.83 | 0.97 | 1.07 | 1.03 | 1.06 | 0.78 | 1.09 | 1.15 | 0.89 | -0.96 | -0.54 | -1.13 | 1.7 | 0.14 | -0.8 | -0.96 | -0.35 | -0.62 | -0.96 | -0.96 | 1.78 | 1.18 | 2.79 | 2.36 | -1.01 | -0.96 | -0.68 | -0.8 | -0.96 | -0.63 | -0.92 | -0.72 | -0.96 | -0.96 | -0.96 | 0.49 | -0.95 | -0.9 | -0.61 | -0.3 | -0.3 | -0.77 | -0.25 | -0.13 | -1.42 | -0.96 | -0.53 | -0.24 | -0.19 | -0.83 | -1.2 | 1.98 | 0.4 | -0.96 | 1.94 | 2.77 | 1.55 | 3.02 | -0.96 | -0.27 | 2.24 | 2.24 | 3 | -0.24 | 1.58 | 2.77 | 0.13 | 0.24 | 1.12 | -1.19 | -0.11 | -0.96 | -0.84 | -0.63 | -0.52 | -0.76 | 0.36 | 0.41 | 0.19 | 0.09 | -0.82 | -0.7 | 1.03 | -0.09 | 0.75 | -0.56 | -0.42 | 0.35 | 0.36 | -0.28 | -0.49 | -0.45 | -1.62 | -0.82 | -0.77 | -1.36 | 2.37 | -0.4 | -0.91 | -0.13 | -1 | -0.96 | -0.96 | -0.96 | -0.96 | -0.96 | 1.3 | 1.04 | -0.4 | 1.07 | 0.97 | 1.46 | 1.87 | 1.19 | 1 | 0.45 | -0.96 | -0.96 | -0.96 | -0.96 | -0.96 | -0.96 | 0.05 | 0.05 | -0.96 | -0.96 | -0.96 | At3g21240 | 258047_at | 4CL2 | encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it does NOT convert ferulate. | 10 | 4-coumarate-CoA ligase activity | response to UV | response to pathogenic fungi | response to wounding | phenylpropanoid metabolism | suberin biosynthesis | lignin biosynthesis | flavonoid biosynthesis | Stilbene, coumarine and lignin biosynthesis | Phenylpropanoid Metabolism | core phenylpropanoid metabolism | Phenylpropanoid pathway | Acyl activating enzymes , CoA ligases, clade IV, 4-coumarate-CoA ligase | 3.24 | 4.74 | ||
| At5g48930 | 0.625 | HCT | Hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase | -1.3 | 2.09 | -0.06 | -0.77 | -0.86 | -0.93 | -1.26 | -1.07 | -1.19 | -1.26 | 1.18 | 2.81 | 2.23 | 1.74 | 0.86 | -0.02 | -1.3 | -1.28 | -1.07 | -0.11 | 0.8 | 0.1 | 1.57 | 0.21 | -0.85 | 0.43 | -0.97 | -0.55 | 0.2 | -0.28 | -0.12 | 0.72 | 0.66 | 0.71 | 0.26 | 0.25 | 0.71 | 0.49 | 0.26 | 0.56 | 0.63 | 0.68 | 0.56 | 0.24 | 0.18 | 0.54 | 0.68 | 0.61 | 0.67 | -0.23 | 0.34 | 0.25 | 0.34 | -0.13 | 1.15 | 0.45 | 0.66 | 0.83 | 1.33 | 0.72 | 1 | 1.1 | 1.81 | 1.6 | -0.25 | -0.4 | 0.27 | 0.3 | 0.38 | 0.6 | 0.23 | 0.68 | 0.62 | -0.08 | -0.46 | 0.93 | 0.85 | 0.03 | -0.04 | 0.27 | 0.75 | 0.5 | 0.63 | 0.25 | 0.04 | -0.09 | 0.28 | 0.05 | 0.15 | -0.28 | -0.39 | 0.54 | -0.7 | -1.44 | 0.82 | 1.53 | 1.13 | 1.46 | -0.66 | -0.14 | 1.33 | 1.37 | 1.42 | 0.9 | 2.29 | 2.08 | -0.14 | 1.51 | 1.77 | -0.67 | -0.64 | -0.9 | -0.77 | -0.74 | -0.82 | -0.85 | -0.52 | -1.04 | -1.05 | -1.01 | -0.94 | -0.89 | -0.06 | -0.32 | -0.12 | -0.84 | -0.38 | -0.7 | -0.68 | -1.17 | -0.89 | -1.04 | -0.32 | 0.25 | -0.54 | -0.93 | 0.6 | -0.28 | -1.36 | -0.92 | -0.31 | -2.27 | -2 | -1.99 | -2.11 | -1.79 | 0.94 | -0.18 | -0.2 | 0.87 | 0.37 | 0.76 | 0.91 | 0.06 | 0.28 | -0.3 | -1.14 | -0.9 | -0.59 | -1.69 | -1.08 | -1.23 | -0.09 | -0.09 | -1.74 | -1.85 | -2.68 | At5g48930 | 248639_at | HCT | Hydroxycinnamoyl-CoA:shikimate/quinate hydroxycinnamoyltransferase | 10 | Phenylpropanoid pathway | acyltransferase, BAHD family, group D, HCT | 3.20 | 5.49 | ||||||