| Co-Expression Analysis of: | CYPedia Home | Institut de Biologie Moléculaire des Plantes (Home) | ||||||||||||||
| CYP708A4 (At3g44970) | save all data as Tab Delimited Table | |||||||||||||||
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| Pathways co-expressed in all 4 data sets (with more than 6 annotation points each) | Find below a list of pathways that are co-expressed with the bait. First a list of pathways is given that are co-expressed in all data sets. Lists for each individual dataset are shown underneath. Depending on the number of co-expressed pathways only the top scoring pathways are given; all data can be saved as text using the link above. | |||||||||||||||
| There are co-expressed pathways in the data set only | ||||||||||||||||
| To the right of each table a thumbnail of the actual co-expression heatmap is given. Klick on the link to see the heatmap containing all co-expressed genes. | ||||||||||||||||
| For more information on how these pathway maps were generated please read the methods page | ||||||||||||||||
| Pathways co-expressed in the Organ and Tissue data set (with more than 6 annotation points) | CYP708A4 (At3g44970) | |||||||||||||||
| max. difference between log2-ratios: | 6.1 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 7.8 | |||||||||||||||
| Link to organ heatmap | ||||||||||||||||
| there are no-co-expressed genes with more than 6 annotation points |
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| Pathways co-expressed in the Stress data set ( with more than 6 annotation points) | CYP708A4 (At3g44970) | |||||||||||||||
| max. difference between log2-ratios: | 3.9 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.8 | |||||||||||||||
| Link to stress heatmap | ||||||||||||||||
| there are no-co-expressed genes with r>0.5 |
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| Pathways co-expressed in the Hormone etc. data set (with more than 6 annotation points) | CYP708A4 (At3g44970) | |||||||||||||||
| max. difference between log2-ratios: | 3.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 1.7 | |||||||||||||||
| Pathway | Source | Scores of Genes | p[Score] | No. of Genes | p[genes] | Link to hormones etc. heatmap | ||||||||||
| flavonoid, anthocyanin, and proanthocyanidin biosynthesis | LitPath | 20 | 0.000 | 2 | 0.000 |
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| response to UV | TAIR-GO | 20 | 0.000 | 2 | 0.000 | |||||||||||
| Phenylpropanoid Metabolism | BioPath | 20 | 0.000 | 4 | 0.001 | |||||||||||
| proanthocyanidin biosynthesis | LitPath | 20 | 0.000 | 2 | 0.000 | |||||||||||
| secondary metabolism | FunCat | 12 | 0.000 | 2 | 0.001 | |||||||||||
| Chlorophyll biosynthesis and breakdown | BioPath | 10 | 0.000 | 1 | 0.012 | |||||||||||
| core phenylpropanoid metabolism | BioPath | 10 | 0.000 | 1 | 0.023 | |||||||||||
| Plastidial Isoprenoids (Chlorophylls, Carotenoids, Tocopherols, Plastoquinone, Phylloquinone) | BioPath | 10 | 0.001 | 1 | 0.069 | |||||||||||
| chlorophyll catabolism | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| flavonoid biosynthesis | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| hypersensitive response | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| phenylpropanoid metabolism | TAIR-GO | 10 | 0.000 | 1 | 0.000 | |||||||||||
| anthocyanin biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.000 | |||||||||||
| flavonoid biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.002 | |||||||||||
| flavonol biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.001 | |||||||||||
| lignin biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.004 | |||||||||||
| suberin biosynthesis | AraCyc | 10 | 0.000 | 1 | 0.001 | |||||||||||
| Flavonoid biosynthesis | KEGG | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Stilbene, coumarine and lignin biosynthesis | KEGG | 10 | 0.000 | 1 | 0.002 | |||||||||||
| chlorophyll and phytochromobilin metabolism | LitPath | 10 | 0.008 | 1 | 0.053 | |||||||||||
| chlorophyll catabolism | LitPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| general phenylpropanoid pathway | LitPath | 10 | 0.000 | 1 | 0.000 | |||||||||||
| Glutathione metabolism | BioPath | 8 | 0.001 | 1 | 0.050 | |||||||||||
| Sequestration of phenylpropanoids (cytosol --> vacuole) | BioPath | 8 | 0.000 | 1 | 0.000 | |||||||||||
| toxin catabolism | TAIR-GO | 8 | 0.000 | 1 | 0.013 | |||||||||||
| Pathways co-expressed in the Mutant data set (with more than 6 annotation points) | CYP708A4 (At3g44970) | |||||||||||||||
| max. difference between log2-ratios: | 5.7 | |||||||||||||||
| max. difference between log2-ratios excluding lowest and highest 5%: | 2.7 | |||||||||||||||
| Link to mutants heatmap | ||||||||||||||||
| there are no-co-expressed genes with r>0.5 |
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| page created by Juergen Ehlting | 06/02/06 | |||||||||||||||